Helicobacter pylori MT5135 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori MT5135 RM systems
Ref: Mannion,A. et al. J Clin Microbiol (2021) In press
REBASE ref # 32133
Complete sequence: 1,615,199 bp
GenBank #: CP071982
REBASE acronym: HpyMT5135
Org_num: 48220
All begin J5D21_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2125 | RNA degradosome polyphosphate kinase | |||
| 2135 | S | S.HpyGH9ORF2140P (98% identity) | GACNNNNNTG | S.HpyMT5135ORF2140P |
| 2140 | M | M.HpyMT5105ORF2125P (98% identity) | GACNNNNNTG | M.HpyMT5135ORF2140P |
| 2145 | R | HpyGM3ORF2125P (95% identity) | GACNNNNNTG | HpyMT5135ORF2140P |
| 2150 | motility associated factor glycosyltransferase | |||
| 3755 | 53 aa hypothetical protein | |||
| 3760 | S | S.HpyH015XIX (95% identity) | S.HpyMT5135ORF3760P | |
| 3765 | cadmium-translocating P-type ATPase | |||
| 4040 | hydroxyethylthiazole kinase | |||
| 4045 | R | Hpy5005ORF7490P (99% identity) | CTANNNNNNNNTTC | HpyMT5135ORF4055P |
| 4050 | S | S.HpyBR20ORF4115P (95% identity) | CTANNNNNNNNTTC | S.HpyMT5135ORF4055P |
| 4055 | M | M.HpyMT5136ORF4045P (97% identity) | CTANNNNNNNNTTC | M.HpyMT5135ORF4055P |
| 4060 | DNA cytosine methyltransferase | |||
| 6745 | 23S rRNA (adenine(2503)-C(2))-methyltransferase | |||
| 6750 | S | S.HpyNCI49ORFWP (98% identity) | CRAANNNNNNNTTYG | S.HpyMT5135XII |
| 6755 | formyltetrahydrofolate deformylase | |||
| 7245 | FAD-dependent thymidylate synthase | |||
| 7250 | S | S.Hpy13AORF7800P (69% identity) | TAAANNNNNRTAA | S.HpyMT5135XIII |
| 7255 | M | M.HpyMT5119ORF6630P (97% identity) | TAAANNNNNRTAA | M.HpyMT5135XIII |
| 7260 | R | Hpy380ORF3335P (95% identity) | TAAANNNNNRTAA | HpyMT5135XIIIP |
| 7265 | M48 family metallopeptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 245 | agmatine/peptidylarginine deiminase | |||
| 250 | M | M1.HpyNY40ORF663P (100% identity) | CCTC | M1.HpyMT5135IV |
| 255 | M | M2.HpyNY40ORF663P (100% identity) | CCTC | M2.HpyMT5135IVP |
| 260 | R | HpyDO5IVP (99% identity) | CCTC | HpyMT5135IVP |
| 265 | DNA cytosine methyltransferase | |||
| 455 | ACP S-malonyltransferase | |||
| ??? | R | Hpy5024ORF3655P (98% identity) | GATC | HpyMT5135XIP |
| 470 | M | M.HpyBR18VII (99% identity) | GATC | M.HpyMT5135XI |
| 475 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 1260 | exodeoxyribonuclease VII large subunit | |||
| ??? | M | M.HpyGCT43ORF265P (97% identity) | TCGA | M.HpyMT5135IX |
| 1270 | 204 aa hypothetical protein | |||
| 1270 | 204 aa hypothetical protein | |||
| 1275 | R | HpyPU009IVP (96% identity) | CCGG | HpyMT5135ORF1280P |
| 1280 | M | M.HpyU411V (100% identity) | CCGG | M.HpyMT5135ORF1280P |
| 1285 | AAA family ATPase | |||
| 1515 | polysaccharide deacetylase | |||
| 1520 | R | HpyMT5124VP (100% identity) | CTNAG | HpyMT5135VP |
| 1525 | M | M.HpyU411VIII (100% identity) | CTNAG | M.HpyMT5135V |
| 1530 | 122 aa hypothetical protein | |||
| 1705 | elongation factor 4 | |||
| 1710 | M | M.HpyCOL306ORF1715P (100% identity) | M.HpyMT5135ORF1710P | |
| 1715 | 133 aa hypothetical protein | |||
| 2215 | Hop family outer membrane protein HopJ/HopK | |||
| 2220 | M | M.HpyMT5124III (98% identity) | ATTAAT | M.HpyMT5135II |
| 2225 | glycosyltransferase family 9 protein | |||
| 2230 | translational GTPase TypA | |||
| 2235 | M | M.Hpy5024ORF8365P (99% identity) | ACNGT | M.HpyMT5135ORF2235P |
| 2240 | R | HpyGH9IIP (98% identity) | ACNGT | HpyMT5135ORF2235P |
| 2245 | DNA cytosine methyltransferase | |||
| 2240 | GIY-YIG nuclease family protein | |||
| ??? | M | M.HpyC024ORF2275P (96% identity) | ACGT | M.HpyMT5135ORF2245P |
| 2255 | R | HpyMT5124ORF2270P (99% identity) | ACGT | HpyMT5135ORF2245P |
| 2260 | catalase | |||
| 2350 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| ??? | M | M.HpyMT5111VIII (99% identity) | GTAC | M.HpyMT5135VII |
| ??? | R | HpyMT5111VIIIP (100% identity) | GTAC | HpyMT5135VIIP |
| 2370 | peptidoglycan DD-metalloendopeptidase family | |||
| 3165 | (Fe-S)-binding protein | |||
| 3170 | RM | HpySP317ORF3195P (93% identity) | HpyMT5135ORF3170P | |
| 3175 | SIR2 family protein | |||
| 3255 | 3-5 exonuclease | |||
| ??? | M | M.HpyU437ORF3220P (98% identity) | CCNNGG | M.HpyMT5135ORF3260P |
| 3265 | R | HpyCOL6ORF3290P (100% identity) | CCNNGG | HpyMT5135ORF3260P |
| 3270 | acetone carboxylase subunit gamma | |||
| 4055 | type I restriction-modification system subunit | |||
| 4060 | M | M.HpyU433ORF4085P (100% identity) | M.HpyMT5135ORF4060P | |
| 4065 | R | HpyU433ORF4085P (100% identity) | HpyMT5135ORF4060P | |
| 4070 | phosphatase PAP2 family protein | |||
| 4350 | flagellar hook protein FlgE | |||
| 4355 | R | HpyCOL306XP (93% identity) | GTNNAC | HpyMT5135VIIIP |
| ??? | M | M.HpyCOL306X (97% identity) | GTNNAC | M.HpyMT5135VIII |
| 4365 | ATP-dependent helicase | |||
| 5065 | FkbM family methyltransferase | |||
| 5070 | M | M.HpyU413X (99% identity) | TCNNGA | M.HpyMT5135ORF5070P |
| 5075 | R | HpyCOL306ORF5330P (100% identity) | TCNNGA | HpyMT5135ORF5070P |
| 5080 | Laminin subunit alpha-2 precursor | |||
| 5265 | 144 aa hypothetical protein | |||
| ??? | M | M.HpyNCI57ORFA1P (98% identity) | GCGC | M.HpyMT5135ORF5270P |
| 5275 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 5715 | HAD family hydrolase | |||
| 5720 | M | M.HpyS300I (100% identity) | CATG | M.HpyMT5135I |
| 5725 | IceA2 protein | |||
| 6445 | 48 aa hypothetical protein | |||
| 6450 | R | HpyKH23ORFYP (95% identity) | GANTC | HpyMT5135VIP |
| 6455 | M | M.HpySP312VII (99% identity) | GANTC | M.HpyMT5135VI |
| 6460 | N-6 DNA methylase | |||
| 6455 | site-specific DNA-methyltransferase | |||
| 6460 | RM | HpyBR19ORF6680P (88% identity) | HpyMT5135ORF6460P | |
| 6465 | carboxylating nicotinate-nucleotide | |||
| 6940 | DNA polymerase I | |||
| 6945 | S | S.Hpyfe28ORF285P (94% identity) | S.HpyMT5135ORF6950P | |
| 6950 | RM | Hpy380ORF3015P (99% identity) | HpyMT5135ORF6950P | |
| 6955 | ComF family protein | |||
| 7080 | LptF/LptG family permease | |||
| ??? | M | M2.HpyU206IV (79% identity) | CCATC | M1.HpyMT5135III |
| 7090 | M | M1.HpyU429IV (99% identity) | CCATC | M2.HpyMT5135III |
| 7095 | R | HpyU432IVP (98% identity) | CCATC | HpyMT5135IIIP |
| 7100 | outer membrane protein | |||
| 7170 | CAAX protease | |||
| 7175 | RM | HpyCOL207XVIII (85% identity) | HpyMT5135ORF7175P | |
| 7180 | 95 aa hypothetical protein | |||
| 7340 | 67 aa hypothetical protein | |||
| 7345 | M | M.HpyU105XI (99% identity) | TGCA | M.HpyMT5135X |
| 7350 | R | HpyZ011XIP (100% identity) | TGCA | HpyMT5135XP |
| 7355 | elongation factor Ts | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6515 | copper response regulator transcription factor | |||
| ??? | M | M.HpyMT5136ORF7545P (96% identity) | M.HpyMT5135ORF6520P | |
| 6530 | R | HpyCOL211ORF6680P (88% identity) | HpyMT5135ORF6520P | |
| 6535 | rod shape-determining protein MreC | |||
| 6585 | DNA/RNA non-specific endonuclease | |||
| 6590 | M | M.HpyCOL5ORF6830P (87% identity) | M.HpyMT5135ORF6590P | |
| 6595 | R | HpyBR7ORF7420P (91% identity) | HpyMT5135ORF6590P | |
| 6600 | biotin synthase | |||
| 7180 | 95 aa hypothetical protein | |||
| 7185 | R | Hpy5005ORF4805P (97% identity) | HpyMT5135ORF7190P | |
| 7190 | M | M.HpyBR2ORF6840P (97% identity) | M.HpyMT5135ORF7190P | |
| 7195 | ATP-dependent DNA helicase RecG | |||