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Putative Helicobacter pylori MT5124 RM systems
Ref: Mannion,A. et al. J Clin Microbiol (2021) In press
REBASE ref # 32133
Complete sequence: 1,661,144 bp
GenBank #: CP071986
REBASE acronym: HpyMT5124
Org_num: 48218
All begin J5D25_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
2150 | RNA degradosome polyphosphate kinase | |||
??? | S | S.HpySP209ORF1765P (97% identity) | S.HpyMT5124ORF2165P | |
2165 | M | M.HpyCOL305ORF2095P (97% identity) | M.HpyMT5124ORF2165P | |
2170 | R | HpyMA07ORF2100P (94% identity) | HpyMT5124ORF2165P | |
2175 | motility associated factor glycosyltransferase | |||
3630 | DNA-binding protein | |||
3635 | M | M.HpyLIM2ORF2675P (88% identity) | CTANNNNNNNTTG | M.HpyMT5124ORF3635P |
3640 | S | S.HpyJO2VI (97% identity) | CTANNNNNNNTTG | S.HpyMT5124ORF3635P |
3645 | R | HpyU437XIIIP (95% identity) | CTANNNNNNNTTG | HpyMT5124ORF3635P |
3650 | hydroxyethylthiazole kinase | |||
3935 | CAAX protease | |||
3940 | S | S.HpySP505VI (96% identity) | CRAANNNNNNCTT | S.HpyMT5124ORF3940P |
3945 | outer membrane beta-barrel protein HofF | |||
6790 | M48 family metallopeptidase | |||
6795 | R | HpyZ011XIIP (95% identity) | HpyMT5124ORF6800P | |
6800 | M | M.HpyU432ORF6745P (96% identity) | M.HpyMT5124ORF6800P | |
6805 | S | S.HpySG06ORF7335P (97% identity) | S.HpyMT5124ORF6800P | |
6810 | FAD-dependent thymidylate synthase | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
250 | agmatine/peptidylarginine deiminase | |||
255 | M | M1.HpyU427V (97% identity) | CCTC | M1.HpyMT5124ORF255P |
260 | M | M2.HpyU432ORF250P (98% identity) | CCTC | M2.HpyMT5124ORF255P |
265 | site-specific DNA-methyltransferase | |||
260 | DNA cytosine methyltransferase | |||
??? | M | M.HpyU437X (99% identity) | GTSAC | M.HpyMT5124ORF265P |
270 | R | HpyBR19VIP (98% identity) | GTSAC | HpyMT5124ORF265P |
275 | DNA cytosine methyltransferase | |||
470 | 329 aa hypothetical protein | |||
475 | M | M.HpyU104V (98% identity) | GATC | M.HpyMT5124VII |
480 | alpha-(1,2)-fucosyltransferase FutC1 | |||
865 | elongation factor P | |||
870 | M | M1.HpyCA8ORF870P (99% identity) | M.HpyMT5124ORF870P | |
875 | 256 aa hypothetical protein | |||
880 | R | R1.HpyC61ORFGP (95% identity) | R1.HpyMT5124ORF870P | |
885 | R | R2.HpyPE105ORF845P (96% identity) | R2.HpyMT5124ORF870P | |
890 | pseudaminic acid synthase | |||
1285 | exodeoxyribonuclease VII large subunit | |||
??? | M | M.Hpy1171ORF4970P (98% identity) | TCGA | M.HpyMT5124X |
1295 | endonuclease | |||
1290 | site-specific DNA-methyltransferase | |||
1295 | R | HpyU306IIP (99% identity) | CCGG | HpyMT5124XIIP |
1300 | M | M.HpyU428III (100% identity) | CCGG | M.HpyMT5124XII |
1305 | AAA family ATPase | |||
1535 | polysaccharide deacetylase | |||
1540 | R | HpyMT5135VP (100% identity) | CTNAG | HpyMT5124VP |
1545 | M | M.HpyU411VIII (100% identity) | CTNAG | M.HpyMT5124V |
1550 | 122 aa hypothetical protein | |||
1725 | elongation factor 4 | |||
1730 | M | M.HpyU306ORF3945P (100% identity) | M.HpyMT5124ORF1730P | |
1735 | 133 aa hypothetical protein | |||
2240 | Hop family outer membrane protein HopJ/HopK | |||
2245 | M | M.HpyMT5118ORF2235P (99% identity) | ATTAAT | M.HpyMT5124III |
2250 | glycosyltransferase family 9 protein | |||
2255 | translational GTPase TypA | |||
2260 | M | M.HpyMT5105XIV (100% identity) | ACNGT | M.HpyMT5124II |
2265 | R | HpyU409IIP (99% identity) | ACNGT | HpyMT5124IIP |
2270 | DNA cytosine methyltransferase | |||
2265 | GIY-YIG nuclease family protein | |||
2270 | M | M.HpyU104ORF2215P (98% identity) | ACGT | M.HpyMT5124ORF2270P |
2275 | R | HpyMT5135ORF2245P (99% identity) | ACGT | HpyMT5124ORF2270P |
2280 | catalase | |||
2455 | Laminin subunit alpha-2 precursor | |||
2460 | R | HpyU306ORF5425P (100% identity) | TCNNGA | HpyMT5124ORF2465P |
2465 | M | M.HpyPE117XIII (98% identity) | TCNNGA | M.HpyMT5124ORF2465P |
2470 | acetyl-CoA carboxylase biotin carboxylase | |||
3220 | ATP-dependent helicase | |||
??? | M | M.HpyU433IX (97% identity) | GTNNAC | M.HpyMT5124IX |
3230 | R | HpyGE4ORF4360P (97% identity) | GTNNAC | HpyMT5124IXP |
3235 | flagellar hook protein FlgE | |||
4435 | acetone carboxylase subunit gamma | |||
4440 | R | HpyMT5105IIP (99% identity) | CCNNGG | HpyMT5124IVP |
4445 | M | M.HpyU306III (100% identity) | CCNNGG | M.HpyMT5124IV |
4450 | 3-5 exonuclease | |||
4520 | SIR2 family protein | |||
4525 | RM | HpyISR9ORF3725P (88% identity) | HpyMT5124ORF4525P | |
4530 | (Fe-S)-binding protein | |||
5340 | peptidoglycan DD-metalloendopeptidase family | |||
??? | R | HpyU104VIP (98% identity) | GTAC | HpyMT5124VIIIP |
??? | M | M.HpyU301ORF2345P (99% identity) | GTAC | M.HpyMT5124VIII |
5360 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
5445 | 144 aa hypothetical protein | |||
??? | M | M.HpySP404XVI (97% identity) | GCGC | M.HpyMT5124ORF5450P |
5455 | flagellar biosynthesis anti-sigma factor FlgM | |||
5900 | HAD family hydrolase | |||
5905 | M | M.HpySH014I (97% identity) | CATG | M.HpyMT5124I |
??? | R | HpyPU009IP (97% identity) | CATG | HpyMT5124IP |
5915 | serine O-acetyltransferase | |||
6630 | S41 family peptidase | |||
6635 | R | HpyU202VIIIP (96% identity) | GANTC | HpyMT5124VIP |
6640 | M | M.Hpy94ORF6990P (99% identity) | GANTC | M.HpyMT5124VI |
6645 | N-6 DNA methylase | |||
6640 | site-specific DNA-methyltransferase | |||
6645 | RM | HpyU421ORF6555P (88% identity) | HpyMT5124ORF6645P | |
6650 | carboxylating nicotinate-nucleotide | |||
6700 | copper response regulator transcription factor | |||
6705 | R | HpyMT5105XIIIP (100% identity) | TGCA | HpyMT5124XIP |
6710 | M | M.HpyMT5105XIII (100% identity) | TGCA | M.HpyMT5124XI |
6715 | 67 aa hypothetical protein | |||
6875 | 716 aa hypothetical protein | |||
6880 | RM | HpyH002XV (94% identity) | HpyMT5124ORF6880P | |
6885 | CAAX protease | |||
6955 | outer membrane protein | |||
6960 | R | HpyCO11IIIP (84% identity) | HpyMT5124ORF6960P | |
6965 | restriction endonuclease | |||
7095 | ComF family protein | |||
7100 | RM | HpyPE108ORF7065P (95% identity) | HpyMT5124ORF7100P | |
7105 | S | S.HpyT004ORF7320P (94% identity) | S.HpyMT5124ORF7100P | |
7110 | DNA polymerase I | |||
7375 | UDP-N-acetylmuramate dehydrogenase | |||
7380 | M | M.HpyGRE044ORF7020P (98% identity) | M.HpyMT5124ORF7380P | |
7385 | ThaI family type II restriction endonuclease | |||
7380 | DNA (cytosine-5-)-methyltransferase | |||
7385 | R | HpyME44ORF6975P (99% identity) | HpyMT5124ORF7385P | |
7390 | glycosyltransferase family 8 protein | |||
7525 | site-specific DNA-methyltransferase | |||
7530 | M | M.HpyMT5105ORF7560P (100% identity) | M.HpyMT5124ORF7530P | |
7535 | glycosyltransferase family 8 protein | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
6860 | ATP-dependent DNA helicase RecG | |||
6865 | M | M.HpyU201ORF7530P (96% identity) | M.HpyMT5124ORF6865P | |
6870 | R | HpyMT5136ORF6880P (94% identity) | HpyMT5124ORF6865P | |
6875 | 716 aa hypothetical protein | |||
7450 | biotin synthase | |||
7455 | R | HpyBR10XVIIIP (93% identity) | HpyMT5124ORF7460P | |
7460 | M | M.HpySP409ORF7470P (95% identity) | M.HpyMT5124ORF7460P | |
7465 | DNA/RNA non-specific endonuclease | |||
7515 | rod shape-determining protein MreC | |||
7520 | R | HpyBGR3ORF6715P (94% identity) | HpyMT5124ORF7525P | |
7525 | M | M.HpyP103ORF6765P (92% identity) | M.HpyMT5124ORF7525P | |
7530 | DUF1887 family protein |