Helicobacter pylori MT5136 |
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Putative Helicobacter pylori MT5136 RM systems
Ref: Mannion,A. et al. J Clin Microbiol (2021) In press
REBASE ref # 32133
Complete sequence: 1,660,636 bp
GenBank #: CP071987
REBASE acronym: HpyMT5136
Org_num: 48221
All begin J5D23_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2125 | RNA degradosome polyphosphate kinase | |||
| 2135 | S | S.HpyCOL205ORF2140P (100% identity) | GCANNNNNNTTT | S.HpyMT5136ORF2140P |
| 2140 | M | M.HpyCOL205ORF2140P (100% identity) | GCANNNNNNTTT | M.HpyMT5136ORF2140P |
| 2145 | R | HpyCOL205ORF2140P (100% identity) | GCANNNNNNTTT | HpyMT5136ORF2140P |
| 2150 | motility associated factor glycosyltransferase | |||
| 3735 | outer membrane beta-barrel protein HofF | |||
| 3740 | S | S.HpyCOL205XIV (100% identity) | S.HpyMT5136ORF3740P | |
| 3745 | 65 aa hypothetical protein | |||
| 4030 | hydroxyethylthiazole kinase | |||
| 4035 | R | HpyCOL205XVP (100% identity) | HpyMT5136ORF4045P | |
| 4040 | S | S.HpyCOL205XV (100% identity) | S.HpyMT5136ORF4045P | |
| 4045 | M | M.HpyCOL205XV (100% identity) | M.HpyMT5136ORF4045P | |
| 4050 | phosphatase PAP2 family protein | |||
| 6805 | M48 family metallopeptidase | |||
| 6810 | R | HpyCOL205IIIP (100% identity) | CCANNNNNNNTTC | HpyMT5136XIIIP |
| 6815 | M | M.HpyCOL205III (100% identity) | CCANNNNNNNTTC | M.HpyMT5136XIII |
| 6820 | S | S.HpyCOL205III (100% identity) | CCANNNNNNNTTC | S.HpyMT5136XIII |
| 6825 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 250 | agmatine/peptidylarginine deiminase | |||
| 255 | M | M1.HpyCOL205V (100% identity) | CCTC | M1.HpyMT5136IV |
| 260 | M | M2.HpyCOL205VP (100% identity) | CCTC | M2.HpyMT5136IVP |
| 265 | R | HpyCOL205VP (100% identity) | CCTC | HpyMT5136IVP |
| 270 | sodium/proline symporter PutP | |||
| 455 | ACP S-malonyltransferase | |||
| 465 | R | HpySP404IXP (100% identity) | GATC | HpyMT5136VIP |
| 470 | M | M.HpyCOL205VII (100% identity) | GATC | M.HpyMT5136VI |
| 475 | alpha-1,2-fucosyltransferase | |||
| 1245 | exodeoxyribonuclease VII large subunit | |||
| 1250 | M | M.HpyCOL205X (100% identity) | TCGA | M.HpyMT5136IX |
| 1255 | 158 aa hypothetical protein | |||
| 1255 | 158 aa hypothetical protein | |||
| ??? | R | HpyCOL205IVP (100% identity) | CCGG | HpyMT5136IIIP |
| 1265 | M | M.HpyCOL205IV (100% identity) | CCGG | M.HpyMT5136III |
| 1270 | AAA family ATPase | |||
| 2215 | Hop family outer membrane protein HopJ/HopK | |||
| 2220 | M | M.HpyCOL205II (100% identity) | ATTAAT | M.HpyMT5136II |
| 2225 | glycosyltransferase family 9 protein | |||
| 2230 | translational GTPase TypA | |||
| ??? | M | M.HpyCOL205ORF2235P (100% identity) | ACNGT | M.HpyMT5136ORF2235P |
| ??? | R | HpyCOL205ORF2235P (100% identity) | ACNGT | HpyMT5136ORF2235P |
| 2245 | DNA cytosine methyltransferase | |||
| ??? | 204 aa hypothetical protein | |||
| 2245 | M | M.HpyCOL205ORF2245P (100% identity) | M.HpyMT5136ORF2245P | |
| 2250 | catalase | |||
| 2335 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| ??? | M | M.HpyMT5124VIII (98% identity) | GTAC | M.HpyMT5136VII |
| ??? | R | HpyCOL205VIIIP (100% identity) | GTAC | HpyMT5136VIIP |
| 2355 | peptidoglycan DD-metalloendopeptidase family | |||
| 3155 | (Fe-S)-binding protein | |||
| 3160 | RM | HpyCOL205ORF3160P (100% identity) | HpyMT5136ORF3160P | |
| 3165 | 449 aa hypothetical protein | |||
| 3240 | 3-5 exonuclease | |||
| ??? | M | M.HpyCOL205ORF3245P (100% identity) | M.HpyMT5136ORF3245P | |
| 3255 | R | HpyCOL205ORF3245P (100% identity) | HpyMT5136ORF3245P | |
| 3260 | acetone carboxylase subunit gamma | |||
| 4330 | flagellar hook protein FlgE | |||
| 4335 | R | HpyCOL205IXP (100% identity) | GTNNAC | HpyMT5136VIIIP |
| ??? | M | M.HpyCOL205IX (98% identity) | GTNNAC | M.HpyMT5136VIII |
| 4345 | ATP-dependent helicase | |||
| 5240 | acetyl-CoA carboxylase biotin carboxylase | |||
| 5245 | M | M.HpyCOL205XII (100% identity) | TCNNGA | M.HpyMT5136XI |
| 5250 | R | HpyCOL205XIIP (100% identity) | TCNNGA | HpyMT5136XIP |
| 5255 | Laminin subunit alpha-2 precursor | |||
| 5440 | 144 aa hypothetical protein | |||
| ??? | M | M.HpyCOL205XVI (98% identity) | GCGC | M.HpyMT5136ORF5445P |
| 5450 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 5735 | Hop family adhesin HopQ | |||
| 5740 | M | M.HpyCOL205XI (100% identity) | TCNGA | M.HpyMT5136X |
| 5745 | R | HpyU408XP (100% identity) | TCNGA | HpyMT5136XP |
| 5750 | purine-nucleoside phosphorylase | |||
| 5920 | HAD family hydrolase | |||
| 5925 | M | M.HpyCOL205I (100% identity) | CATG | M.HpyMT5136I |
| 5930 | IceA2 protein | |||
| 6640 | PDZ domain-containing protein | |||
| 6645 | R | HpyCOL205VIP (100% identity) | GANTC | HpyMT5136VP |
| 6650 | M | M.HpySORF7000P (100% identity) | GANTC | M.HpyMT5136V |
| 6655 | N-6 DNA methylase | |||
| 6650 | site-specific DNA-methyltransferase | |||
| 6655 | RM | HpyCOL205ORF6660P (100% identity) | HpyMT5136ORF6655P | |
| 6660 | carboxylating nicotinate-nucleotide | |||
| 6715 | anthranilate synthase component I | |||
| 6720 | R | HpyZ011XIP (100% identity) | TGCA | HpyMT5136XIIP |
| 6725 | M | M.HpyU202XIV (100% identity) | TGCA | M.HpyMT5136XII |
| 6730 | 67 aa hypothetical protein | |||
| 6885 | type III restriction-modification system | |||
| 6890 | RM | HpyCOL205ORF6895P (100% identity) | HpyMT5136ORF6890P | |
| 6895 | 176 aa hypothetical protein | |||
| 6975 | outer membrane protein | |||
| 6980 | R | HpyCOL205ORF6985P (100% identity) | HpyMT5136ORF6980P | |
| 6985 | restriction endonuclease | |||
| 7115 | ComF family protein | |||
| 7120 | RM | HpyCOL205ORF7125P (100% identity) | HpyMT5136ORF7120P | |
| 7125 | S | S1.HpyCOL205ORF7125P (100% identity) | S1.HpyMT5136ORF7120P | |
| 7130 | S | S2.HpyCOL205ORF7125P (100% identity) | S2.HpyMT5136ORF7120P | |
| 7135 | DNA polymerase I | |||
| 7545 | site-specific DNA-methyltransferase | |||
| 7550 | M | M.HpyCOL205ORF7555P (100% identity) | M.HpyMT5136ORF7550P | |
| 7555 | glycosyltransferase family 8 protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6875 | ATP-dependent DNA helicase RecG | |||
| 6880 | M | M.HpyCOL205ORF6885P (100% identity) | M.HpyMT5136ORF6880P | |
| 6885 | R | HpyCOL205ORF6885P (100% identity) | HpyMT5136ORF6880P | |
| 6890 | class I SAM-dependent DNA methyltransferase | |||
| 7475 | biotin synthase | |||
| 7480 | R | HpyCOL205ORF7490P (100% identity) | HpyMT5136ORF7485P | |
| 7485 | M | M.HpyCOL205ORF7490P (100% identity) | M.HpyMT5136ORF7485P | |
| 7490 | DNA/RNA non-specific endonuclease | |||
| 7535 | rod shape-determining protein MreC | |||
| 7540 | R | HpyCOL205ORF7550P (100% identity) | HpyMT5136ORF7545P | |
| 7545 | M | M.HpyCOL205ORF7550P (100% identity) | M.HpyMT5136ORF7545P | |
| 7550 | DUF1887 family protein | |||