Pseudoalteromonas viridis BBR56 |
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Putative Pseudoalteromonas viridis BBR56 RM systems
Ref: Handayani,D.P. et al. unpublished
REBASE ref # 32244
| Sequence length: | GenBank #: | |
| chromosome 1: | 4,248,240 bp | CP072425 |
| chromosome 2: | 1,301,391 bp | CP072426 |
REBASE acronym: PviBBR56
Org_num: 48712
All begin J5X90_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 12605 | 167 aa hypothetical protein | |||
| 12610 | R | Pst11900ORF16065P (96% identity) | PviBBR56ORF12615P | |
| 12615 | M | M.PpiDE2BORF10505P (96% identity) | M.PviBBR56ORF12615P | |
| 12620 | S | S.Pst4301ORF14185P (69% identity) | S.PviBBR56ORF12615P | |
| 12625 | 1231 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 1845 | DEAD/DEAH box helicase family protein | |||
| 1850 | M | M.PmiK817ORF13170P (97% identity) | M.PviBBR56ORF1850P | |
| 1855 | DUF3780 and DUF4357 domain-containing protein | |||
| 2390 | 49 aa hypothetical protein | |||
| 2395 | M | M.Bma65I (74% identity) | M.PviBBR56ORF2395P | |
| 2400 | V | V.Msps36ORF14655P (48% identity) | V.PviBBR56ORF2395P | |
| ??? | R | DspMK7ORFAP (49% identity) | PviBBR56ORF2395P | |
| 2415 | helix-turn-helix transcriptional regulator | |||
| chromosome 2 | ||||
| 20830 | 104 aa hypothetical protein | |||
| 20835 | V | V.Mmo12358ORF292P (42% identity) | V.PviBBR56ORF20840P | |
| 20840 | M | M.VspSS3ORF1567P (62% identity) | M.PviBBR56ORF20840P | |
| 20845 | 373 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 1835 | TraI domain-containing protein | |||
| 1840 | R | Pst33672MrrP (98% identity) | PviBBR56MrrP | |
| 1845 | DEAD/DEAH box helicase family protein | |||
| chromosome 2 | ||||
| 20850 | sensor histidine kinase | |||
| 20855 | R | Pru4059ORF20290P (91% identity) | PviBBR56ORF20855P | |
| 20860 | class I SAM-dependent methyltransferase | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 6645 | SPOR domain-containing protein | |||
| 6650 | M | M.Pru4059ORF1040P (97% identity) | M.PviBBR56ORF6650P | |
| 6655 | DUF2970 domain-containing protein | |||