Escherichia coli RIVM_C028620 |
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Putative Escherichia coli RIVM_C028620 RM systems
Ref: Hendrickx,A.P.A. et al. unpublished
REBASE ref # 31854
Complete sequence: 5,192,168 bp
GenBank #: CP068815
REBASE acronym: Eco28620
Org_num: 46775
All begin JNN49_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 15200 | transcription factor | |||
| 15205 | M | M.EcosB2CORFEP (100% identity) | GAGNNNNNGTTY | M.Eco28620ORF15205P |
| 15210 | S | S.EcosB2CORFEP (100% identity) | GAGNNNNNGTTY | S.Eco28620ORF15205P |
| 15215 | DUF4433 domain-containing protein | |||
| 15220 | macro domain-containing protein | |||
| 15225 | R | PmeBin330ORFCP (100% identity) | GAGNNNNNGTTY | Eco28620ORF15205P |
| 15230 | M48 family metallopeptidase | |||
| 20900 | DUF262 domain-containing protein | |||
| 20905 | R | EcosLF82ORF3455P (100% identity) | GGANNNNNNNNATGC | Eco28620ORF20910P |
| 20910 | M | M.EcosLF82ORF3455P (100% identity) | GGANNNNNNNNATGC | M.Eco28620ORF20910P |
| 20915 | S | S.EcosA32I (100% identity) | GGANNNNNNNNATGC | S.Eco28620ORF20910P |
| 20920 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1680 | cell division protein DamX | |||
| 1685 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco28620DamP |
| 1690 | ribulose-phosphate 3-epimerase | |||
| 2280 | DUF2556 family protein | |||
| 2285 | M | M.Sdy12039ORFBP (100% identity) | ATGCAT | M.Eco28620ORF2285P |
| 2290 | DNA-binding transcriptional regulator Fis | |||
| 6490 | ANR family transcriptional regulator | |||
| 6495 | M | M1.Ecoi127aORF1280P (100% identity) | M1.Eco28620ORF6495P | |
| 6500 | VRR-NUC domain-containing protein | |||
| 6505 | M | M.EcoSTEC640ORF7045P (100% identity) | M2.Eco28620ORF6495P | |
| 6510 | 106 aa hypothetical protein | |||
| 9835 | phosphohydrolase | |||
| 9840 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.Eco28620DcmP |
| 9845 | V | V.SflC32DcmP (74% identity) | V.Eco28620DcmP | |
| 9850 | drug/metabolite exporter YedA | |||
| 20630 | phage holin, lambda family | |||
| 20635 | M | M.Ecoi127aORF3990P (100% identity) | M.Eco28620ORF20635P | |
| 20640 | 67 aa hypothetical protein | |||
| 20675 | LexA family transcriptional regulator | |||
| 20680 | M | M.Sso90ORF15820P (100% identity) | GATC | M.Eco28620ORF20680P |
| 20685 | PerC family transcriptional regulator | |||
| 21085 | HNH endonuclease | |||
| 21090 | R | Ecoi127aORF4076P (100% identity) | Eco28620ORF21090P | |
| 21095 | 59 aa hypothetical protein | |||
| 21385 | conjugal transfer protein TraG N-terminal | |||
| 21390 | M | M.EcosS3ORF15775P (100% identity) | M.Eco28620ORF21390P | |
| 21395 | R | EcosS3ORF15775P (100% identity) | Eco28620ORF21390P | |
| 21400 | 527 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 20920 | endoribonuclease SymE | |||
| 20925 | R | EcoRb3GmrSDP (100% identity) | Eco28620GmrSDP | |
| 20930 | 26 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 13795 | NinE family protein | |||
| 13800 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.Eco28620ORF13800P |
| 13805 | recombination protein NinB | |||