Treponema phagedenis Reiter |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Treponema phagedenis Reiter RM systems
Ref: Clegg,S.R. et al. unpublished
REBASE ref # 32482
Complete sequence: 2,880,698 bp
GenBank #: CP031394
REBASE acronym: TphR
Org_num: 49765
All begin DWQ65_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4775 | 153 aa hypothetical protein | |||
| 4780 | M | M.TphV1ORF40163P (100% identity) | M.TphRORF4780P | |
| 4785 | S | S.TphB431ORF6160P (81% identity) | S.TphRORF4780P | |
| 4790 | uracil permease | |||
| 8870 | MFS transporter | |||
| 8875 | R | TphV1ORF30177P (100% identity) | TphRORF8890P | |
| 8880 | S | S1.TphB365ORF15335P (64% identity) | S.TphRORF8890P | |
| 8885 | 110 aa hypothetical protein | |||
| 8890 | M | M.TphV1ORF30177P (100% identity) | M.TphRORF8890P | |
| 8895 | 66 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | 555 aa hypothetical protein | |||
| 40 | M | M.TphV1ORF260015P (100% identity) | M.TphRORF40P | |
| 45 | 172 aa hypothetical protein | |||
| 2300 | NYN domain-containing protein | |||
| 2305 | M | M.Tba29ORF7405P (52% identity) | M.TphRORF2305P | |
| 2310 | R | Cin12927SIP (61% identity) | TphRORF2305P | |
| 2315 | 490 aa hypothetical protein | |||
| 2460 | 121 aa hypothetical protein | |||
| 2465 | S | S.TphV1ORF20197P (51% identity) | S.TphRORF2470P | |
| 2470 | RM | TphV1ORF20197P (95% identity) | TphRORF2470P | |
| 2475 | ImmA/IrrE family metallo-endopeptidase | |||
| 2625 | 100 aa hypothetical protein | |||
| 2630 | M | M.TphV1ORF30070P (95% identity) | M.TphRORF2630P | |
| 2635 | 39 aa hypothetical protein | |||
| 3325 | 71 aa hypothetical protein | |||
| 3330 | M | M.TphS23ORF3870P (94% identity) | M.TphRORF3330P | |
| 3335 | ASCH domain-containing protein | |||
| 4070 | DUF3847 domain-containing protein | |||
| 4075 | R | TphS23ORF8205P (99% identity) | GATC | TphRORF4080P |
| 4080 | M | M.TphV1ORF20037P (100% identity) | GATC | M.TphRORF4080P |
| 4085 | C | C.TphV1ORF20037P (100% identity) | C.TphRORF4080P | |
| 4090 | replication initiation protein | |||
| 7080 | TdeIII family type II restriction endonuclease | |||
| 7085 | M | M.TphV1ORF40108P (100% identity) | M.TphRORF7085P | |
| 7090 | ABC transporter ATP-binding protein | |||
| 8415 | sucrose-6-phosphate hydrolase | |||
| 8420 | M | M2.TphV1ORF510001P (100% identity) | M1.TphRORF8420P | |
| 8425 | M | M1.TphS85ORF13995P (99% identity) | M2.TphRORF8420P | |
| ??? | R | TphT320AORF9745P (100% identity) | TphRORF8420P | |
| 8435 | TIGR02678 family protein | |||
| 10615 | 239 aa hypothetical protein | |||
| ??? | R | TphV1ORF290010P (100% identity) | TphRORF10620P | |
| 10625 | 76 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2095 | IclR family transcriptional regulator | |||
| 2100 | R | TphV1ORF140026P (99% identity) | TphRORF2105P | |
| 2105 | M | M.TphS85ORF10850P (96% identity) | M.TphRORF2105P | |
| 2110 | tyrosine phenol-lyase | |||