Treponema medium ATCC 700293 |
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Putative Treponema medium ATCC 700293 RM systems
Ref: Clegg,S.R. et al. unpublished
REBASE ref # 32482
Complete sequence: 2,721,998 bp
GenBank #: CP031393
REBASE acronym: Tme700293
Org_num: 49563
All begin DWB79_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 6340 | cell filamentation protein Fic | |||
| 6345 | S | S1.TmeT19ORF7110P (54% identity) | S.Tme700293ORF6345P | |
| 6350 | 227 aa hypothetical protein | |||
| 12075 | site-2 protease family protein | |||
| 12080 | R | TmeT19ORF12840P (100% identity) | Tme700293ORF12085P | |
| 12085 | M | M.Tde853ORF225P (96% identity) | M.Tme700293ORF12085P | |
| 12090 | cell filamentation protein Fic | |||
| 12095 | S | S1.TmeT19ORF12840P (98% identity) | S1.Tme700293ORF12085P | |
| 12100 | S | S5.Tme700293ORF12085P (100% identity) | S2.Tme700293ORF12085P | |
| 12105 | integrase | |||
| 12110 | type II toxin-antitoxin system VapC family | |||
| 12115 | AbrB/MazE/SpoVT family DNA-binding | |||
| 12120 | S | S3.TmeT19ORF12840P (100% identity) | S3.Tme700293ORF12085P | |
| 5 | S | S1.Tme700293ORF12085P (91% identity) | S4.Tme700293ORF12085P | |
| 10 | S | S2.Tme700293ORF12085P (100% identity) | S5.Tme700293ORF12085P | |
| 15 | integrase | |||
| 20 | type II toxin-antitoxin system VapC family | |||
| 25 | AbrB/MazE/SpoVT family DNA-binding | |||
| 30 | S | S6.TmeT19ORF12840P (100% identity) | S6.Tme700293ORF12085P | |
| 35 | 69 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1660 | 109 aa hypothetical protein | |||
| 1665 | R | TmeT19ORF1725P (86% identity) | Tme700293ORF1670P | |
| 1670 | M | M.TmeT19ORF1725P (90% identity) | M.Tme700293ORF1670P | |
| 1675 | XRE family transcriptional regulator | |||
| 3765 | M23 family metallopeptidase | |||
| 3770 | M | M.TmeT19ORF3820P (96% identity) | M.Tme700293ORF3770P | |
| 3775 | phosphomannomutase/phosphoglucomutase | |||
| 10955 | SAM-dependent methyltransferase | |||
| 10960 | R | TmeT19ORF11720P (100% identity) | Tme700293ORF10965P | |
| 10965 | M | M.Tvi862ORF2620P (100% identity) | M.Tme700293ORF10965P | |
| 10970 | DNA mismatch endonuclease Vsr | |||
| 10965 | DNA cytosine methyltransferase | |||
| 10970 | V | V.TmeT19ORF11735P (100% identity) | V.Tme700293ORF10980P | |
| 10975 | R | Tvi862ORF2635P (100% identity) | Tme700293ORF10980P | |
| 10980 | M | M.TmeT19ORF11735P (100% identity) | M.Tme700293ORF10980P | |
| 10985 | DNA-binding protein | |||
| 11235 | PASTA domain-containing protein | |||
| 11240 | M | M.TmeT19ORF11995P (100% identity) | M.Tme700293ORF11240P | |
| 11245 | R | TmeT19ORF11995P (100% identity) | Tme700293ORF11240P | |
| 11250 | ATP-binding cassette domain-containing protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3910 | CRISPR-associated endonuclease Cas1 | |||
| 3915 | R | TmeT19McrBP (100% identity) | Tme700293McrBP | |
| 3920 | R | TmeT19McrCP (100% identity) | Tme700293McrCP | |
| 3925 | TIGR02221 family CRISPR-associated protein | |||