Treponema medium T19 |
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Putative Treponema medium T19 RM systems
Ref: Staton,G.J. et al. unpublished
REBASE ref # 32483
Complete sequence: 2,886,632 bp
GenBank #: CP027017
REBASE acronym: TmeT19
Org_num: 49564
All begin C5N99_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 7105 | cell filamentation protein Fic | |||
| 7110 | S | S.Tvi802ORF9925P (55% identity) | S1.TmeT19ORF7110P | |
| 7115 | S | S.Tme700293ORF6345P (43% identity) | S2.TmeT19ORF7110P | |
| 7120 | 227 aa hypothetical protein | |||
| 12830 | site-2 protease family protein | |||
| 12835 | R | Tme700293ORF12085P (100% identity) | TmeT19ORF12840P | |
| 12840 | M | M.Tvi802ORF4235P (96% identity) | M.TmeT19ORF12840P | |
| 12845 | Fic family protein | |||
| 12850 | S | S1.Tme700293ORF12085P (98% identity) | S1.TmeT19ORF12840P | |
| 12855 | S | S5.TmeT19ORF12840P (100% identity) | S2.TmeT19ORF12840P | |
| 12865 | type II toxin-antitoxin system VapC family | |||
| 12870 | AbrB/MazE/SpoVT family DNA-binding | |||
| 12875 | S | S3.Tme700293ORF12085P (100% identity) | S3.TmeT19ORF12840P | |
| 5 | S | S1.TmeT19ORF12840P (91% identity) | S4.TmeT19ORF12840P | |
| 15 | S | S2.TmeT19ORF12840P (100% identity) | S5.TmeT19ORF12840P | |
| 25 | type II toxin-antitoxin system VapC family | |||
| 30 | AbrB/MazE/SpoVT family DNA-binding | |||
| 35 | S | S6.Tme700293ORF12085P (100% identity) | S6.TmeT19ORF12840P | |
| 40 | 69 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1715 | 109 aa hypothetical protein | |||
| 1720 | R | Tme700293ORF1670P (86% identity) | TmeT19ORF1725P | |
| 1725 | M | M.Tme700293ORF1670P (90% identity) | M.TmeT19ORF1725P | |
| 1730 | XRE family transcriptional regulator | |||
| 3815 | M23 family metallopeptidase | |||
| 3820 | M | M.Tme700293ORF3770P (96% identity) | M.TmeT19ORF3820P | |
| 3825 | 81 aa hypothetical protein | |||
| 4960 | hydroxyacid dehydrogenase | |||
| 4965 | RM | Bin174ORF12665P (42% identity) | TmeT19ORF4965P | |
| 4970 | DNA modification methylase | |||
| 11710 | SAM-dependent methyltransferase | |||
| 11715 | R | Tme700293ORF10965P (100% identity) | TmeT19ORF11720P | |
| 11720 | M | M.Tvi862ORF2620P (100% identity) | M.TmeT19ORF11720P | |
| 11725 | DNA mismatch endonuclease Vsr | |||
| 11720 | DNA cytosine methyltransferase | |||
| 11725 | V | V.Tme700293ORF10980P (100% identity) | V.TmeT19ORF11735P | |
| 11730 | R | Tvi862ORF2635P (100% identity) | TmeT19ORF11735P | |
| 11735 | M | M.Tme700293ORF10980P (100% identity) | M.TmeT19ORF11735P | |
| 11740 | DNA-binding protein | |||
| 11990 | PASTA domain-containing protein | |||
| 11995 | M | M.Tme700293ORF11240P (100% identity) | M.TmeT19ORF11995P | |
| 12000 | R | Tme700293ORF11240P (100% identity) | TmeT19ORF11995P | |
| 12005 | ATP-binding cassette domain-containing protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3960 | CRISPR-associated endonuclease Cas1 | |||
| 3965 | R | Tme700293McrBP (100% identity) | TmeT19McrBP | |
| 3970 | R | Tme700293McrCP (100% identity) | TmeT19McrCP | |
| 3975 | TIGR02221 family CRISPR-associated protein | |||