Escherichia coli 40EC |
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Putative Escherichia coli 40EC RM systems
Ref: Ding,Y. et al. bioRxiv (2021)
REBASE ref # 31807
| Sequence length: | GenBank #: | |
| Chromosome: | 4,790,484 bp | CP070920 |
| plasmid p40EC-2: | 104,226 bp | CP070922 |
| plasmid p40EC-3: | 102,703 bp | CP070923 |
REBASE acronym: Eco40EC
Org_num: 46512
All begin JR909_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20140 | DUF4942 domain-containing protein | |||
| 20145 | M | M.EcoW26ORF3070P (100% identity) | M.Eco40ECORF20145P | |
| 20150 | S | S.EcoW26ORF3070P (100% identity) | S.Eco40ECORF20145P | |
| 20155 | R | SdyFF10ORF20075P (100% identity) | Eco40ECORF20145P | |
| 20165 | NADPH-dependent aldehyde reductase Ahr | |||
| plasmid p40EC-3 | ||||
| 24695 | type II toxin-antitoxin system Phd/YefM family | |||
| 24700 | M | M.EcosS142ORF43560P (100% identity) | M.Eco40ECORF24700P | |
| 24705 | S | S1.EcoP61ORF22960P (100% identity) | S.Eco40ECORF24700P | |
| 24710 | R | EcoZ063ORF23860P (99% identity) | Eco40ECORF24700P | |
| 24715 | 3-phosphatase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1690 | cell division protein DamX | |||
| 1695 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco40ECDamP |
| 1700 | ribulose-phosphate 3-epimerase | |||
| 2220 | DUF2556 family protein | |||
| 2225 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco40ECORF2225P |
| 2230 | DNA-binding transcriptional regulator Fis | |||
| 8995 | phosphohydrolase | |||
| 9000 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco40ECDcmP |
| 9005 | V | V.SflFF64DcmP (100% identity) | V.Eco40ECDcmP | |
| 9010 | drug/metabolite exporter YedA | |||
| 9990 | 3-5 exoribonuclease | |||
| 9995 | M | M1.Eco0687ORF9695P (99% identity) | M1.Eco40ECORF9995P | |
| 10000 | 66 aa hypothetical protein | |||
| 10005 | 109 aa hypothetical protein | |||
| 10010 | M | M2.Eco0687ORF9695P (100% identity) | M2.Eco40ECORF9995P | |
| 10015 | replication endonuclease | |||
| 17690 | 379 aa hypothetical protein | |||
| 17695 | R | Sso8033ORF3755P (100% identity) | Eco40ECORF17700P | |
| 17700 | M | M.SflSTLE1ORF5615P (100% identity) | M.Eco40ECORF17700P | |
| 17705 | 257 aa hypothetical protein | |||
| 17880 | phage holin, lambda family | |||
| 17885 | M | M.SflLIN17ORF17405P (100% identity) | M.Eco40ECORF17885P | |
| 17890 | 67 aa hypothetical protein | |||
| 17920 | LexA family transcriptional regulator | |||
| 17925 | M | M.EcoXH990ORF8990P (100% identity) | GATC | M.Eco40ECORF17925P |
| 17930 | PerC family transcriptional regulator | |||
| 19650 | phage lysis protein EssD | |||
| 19655 | M | M.Sso63633ORF22290P (100% identity) | M.Eco40ECORF19655P | |
| 19660 | 67 aa hypothetical protein | |||
| plasmid p40EC-2 | ||||
| 23960 | 104 aa hypothetical protein | |||
| 23965 | M | M.SspPIBORF23080P (100% identity) | M.Eco40ECORF23965P | |
| 23970 | 73 aa hypothetical protein | |||