Escherichia coli DE17 |
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Putative Escherichia coli DE17 RM systems
Ref: Wang,Z. unpublished
REBASE ref # 27587
Complete sequence: 4,944,436 bp
GenBank #: CP045206
REBASE acronym: EcoDE17
Org_num: 46543
All begin GBG22_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 20470 | restriction endonuclease | |||
| ??? | R | EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | EcoDE17ORF20480P |
| 20480 | M | M.EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | M.EcoDE17ORF20480P |
| 20485 | S | S.EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | S.EcoDE17ORF20480P |
| 20490 | endoribonuclease SymE | |||
| 21590 | lactate utilization protein C | |||
| 21595 | R | EcoW087ORF4400P (100% identity) | EcoDE17ORF21605P | |
| 21600 | S | S.EcoWH398ORF26840P (100% identity) | S.EcoDE17ORF21605P | |
| ??? | M | M.EcoA19ORF18965P (100% identity) | M.EcoDE17ORF21605P | |
| 21610 | DNA-binding protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1740 | cell division protein DamX | |||
| 1745 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoDE17DamP |
| 1750 | ribulose-phosphate 3-epimerase | |||
| 2365 | DUF2556 domain-containing protein | |||
| 2370 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoDE17ORF2370P |
| 2375 | DNA-binding transcriptional regulator Fis | |||
| 5785 | PerC family transcriptional regulator | |||
| 5790 | M | M.EcoY26ORF4515P (100% identity) | GATC | M.EcoDE17ORF5790P |
| 5795 | LexA family transcriptional regulator | |||
| 13710 | drug/metabolite exporter YedA | |||
| 13715 | V | V.EcoF18DcmP (100% identity) | V.EcoDE17DcmP | |
| 13720 | M | M.EcoF18DcmP (100% identity) | CCWGG | M.EcoDE17DcmP |
| 13725 | phosphohydrolase | |||
| 15960 | replication endonuclease | |||
| 15965 | M | M.EcoE51ORF6525P (100% identity) | GATC | M.EcoDE17ORF15965P |
| 15970 | TraR/DksA family transcriptional regulator | |||
| 20730 | HNH endonuclease | |||
| 20735 | R | Ecoi127aORF4076P (100% identity) | EcoDE17ORF20735P | |
| 20740 | 59 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6025 | IS66 family transposase | |||
| 6030 | R | EcoW224NGmrSDP (90% identity) | EcoDE17GmrSDP | |
| 6035 | DinI-like family protein | |||
| 20465 | GTPase | |||
| 20470 | R | EcosS1MrrP (100% identity) | EcoDE17MrrP | |
| 20475 | type I restriction-modification system | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 14215 | NinE family protein | |||
| 14220 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.EcoDE17ORF14220P |
| 14225 | recombination protein NinB | |||