Escherichia coli XH993 |
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Putative Escherichia coli XH993 RM systems
Ref: Hua,X. and Yu,Y. unpublished
REBASE ref # 24129
| Sequence length: | GenBank #: | |
| Chromosome: | 4,761,001 bp | CP019361 |
| plasmid pXH993: | 349,248 bp | CP019360 |
REBASE acronym: EcoXH993
Org_num: 46818
All begin BW158_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 23710 | 94 aa hypothetical protein | |||
| 23715 | R | EcoUM1887ORF20145P (100% identity) | AAGNNNNNNNRTTTC | EcoXH993ORF23720P |
| 23720 | M | M.EcoZ503ORFCP (100% identity) | AAGNNNNNNNRTTTC | M.EcoXH993ORF23720P |
| 23725 | S | S.Ecoa005ORF2260P (100% identity) | AAGNNNNNNNRTTTC | S.EcoXH993ORF23720P |
| 23730 | 112 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4115 | protein DamX | |||
| 4120 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoXH993DamP |
| 4125 | ribulose-phosphate 3-epimerase | |||
| 4765 | transporter | |||
| 4770 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcoXH993ORF4770P |
| 4775 | Fis family transcriptional regulator | |||
| 12130 | hydrolase | |||
| 12135 | M | M.EcoSCZE5DcmP (100% identity) | CCWGG | M.EcoXH993DcmP |
| 12140 | V | V.SflSTLE3DcmP (100% identity) | V.EcoXH993DcmP | |
| 12145 | drug/metabolite exporter YedA | |||
| 21775 | IS110 family transposase | |||
| 21780 | RM | SflLIN17ORF3140P (100% identity) | EcoXH993ORF21780P | |
| 21785 | DEAD/DEAH box helicase | |||
| 23940 | HNH endonuclease | |||
| 23945 | R | R1.EcoVL01ORF19665P (100% identity) | R1.EcoXH993ORF23960P | |
| 23950 | transposase | |||
| 23955 | transposase | |||
| 23960 | M | M.EcoVL01ORF19665P (100% identity) | M.EcoXH993ORF23960P | |
| 23965 | R | EcoSTEC384ORFGP (100% identity) | R2.EcoXH993ORF23960P | |
| 23970 | transposase | |||
| plasmid pXH993 | ||||
| 130 | 202 aa hypothetical protein | |||
| 135 | M | M.YpsF1ORFBP (100% identity) | M.EcoXH993ORF135P | |
| 140 | 108 aa hypothetical protein | |||
| 1585 | nuclease | |||
| 1590 | M | M.YpsF1ORFCP (100% identity) | M.EcoXH993ORF1590P | |
| 1595 | 439 aa hypothetical protein | |||
| 5 | 277 aa hypothetical protein | |||
| 10 | M | M.YpsF1ORFDP (100% identity) | M.EcoXH993ORF10P | |
| 15 | DNA-binding protein | |||