Helicobacter pylori SHIM-010 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori SHIM-010 RM systems
Ref: Gutierrez-Escobar,A.J. et al. Front Microbiol 11, 601839 (2020)
REBASE ref # 31890
Complete sequence: 1,675,471 bp
GenBank #: CP051505
REBASE acronym: HpySH010
Org_num: 48233
All begin HG562_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2425 | RNA degradosome polyphosphate kinase | |||
| 2435 | S | S.HpySH007ORF2305P (100% identity) | S.HpySH010ORF2440P | |
| 2440 | M | M.HpySH002ORF2435P (100% identity) | M.HpySH010ORF2440P | |
| 2445 | R | HpySH002ORF2435P (99% identity) | HpySH010ORF2440P | |
| 2450 | motility associated factor glycosyltransferase | |||
| 2985 | cadmium-translocating P-type ATPase | |||
| 2990 | S | S.HpySH002ORF2985P (100% identity) | CAANNNNNNNTTC | S.HpySH010ORF2990P |
| 2995 | outer membrane beta-barrel protein HofF | |||
| 7090 | cag pathogenicity island protein | |||
| 7095 | S | S.HpySH002ORF7070P (100% identity) | S.HpySH010ORF7095P | |
| 7100 | formyltetrahydrofolate deformylase | |||
| 7585 | FAD-dependent thymidylate synthase | |||
| 7590 | S | S.HpySH002ORF7580P (100% identity) | S.HpySH010ORF7600P | |
| 7595 | CAAX protease | |||
| 7600 | M | M.HpySH002ORF7580P (100% identity) | M.HpySH010ORF7600P | |
| 7605 | R | HpySH002ORF7580P (100% identity) | HpySH010ORF7600P | |
| 7610 | M48 family metallopeptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 245 | agmatine/peptidylarginine deiminase | |||
| 250 | M | M1.HpySH002IV (100% identity) | CCTC | M1.HpySH010IV |
| 255 | M | M2.HpySH002IVP (100% identity) | CCTC | M2.HpySH010IVP |
| 260 | sodium/proline symporter PutP | |||
| 430 | ACP S-malonyltransferase | |||
| 440 | R | HpySH002IXP (100% identity) | GATC | HpySH010IXP |
| 445 | M | M.HpySH002IX (100% identity) | GATC | M.HpySH010IX |
| 450 | alpha-1,2-fucosyltransferase | |||
| 1555 | exodeoxyribonuclease VII large subunit | |||
| ??? | M | M.HpySH002XI (100% identity) | TCGA | M.HpySH010XI |
| 1565 | 204 aa hypothetical protein | |||
| 1565 | 204 aa hypothetical protein | |||
| ??? | R | HpySH002IIIP (100% identity) | CCGG | HpySH010IIIP |
| 1575 | M | M.HpySH002III (100% identity) | CCGG | M.HpySH010III |
| 1580 | AAA family ATPase | |||
| 1815 | polysaccharide deacetylase | |||
| 1820 | R | HpySORF1620P (100% identity) | CTNAG | HpySH010VP |
| 1825 | M | M.HpySH002V (100% identity) | CTNAG | M.HpySH010V |
| 1830 | 118 aa hypothetical protein | |||
| 1995 | elongation factor 4 | |||
| 2000 | M | M.HpySH014ORF1855P (100% identity) | M.HpySH010ORF2000P | |
| 2005 | 133 aa hypothetical protein | |||
| 2170 | Sec-independent protein translocase subunit | |||
| 2180 | M | M.HpySH002ORF2175P (100% identity) | M.HpySH010ORF2180P | |
| 2185 | Holliday junction branch migration DNA helicase | |||
| 2510 | Hop family outer membrane protein HopJ/HopK | |||
| 2515 | M | M.HpySH002II (100% identity) | ATTAAT | M.HpySH010II |
| 2520 | glycosyltransferase family 9 protein | |||
| 2525 | translational GTPase TypA | |||
| 2530 | M | M.HpySH002ORF2525P (100% identity) | M.HpySH010ORF2530P | |
| 2535 | catalase | |||
| 2685 | phosphatase PAP2 family protein | |||
| 2690 | R | HpySORF2550P (100% identity) | HpySH010ORF2695P | |
| 2695 | M | M.HpySH002ORF2690P (100% identity) | M.HpySH010ORF2695P | |
| 2700 | type I restriction-modification system subunit M | |||
| 3565 | 449 aa hypothetical protein | |||
| 3570 | RM | HpySH002ORF3565P (100% identity) | HpySH010ORF3570P | |
| 3575 | (Fe-S)-binding protein | |||
| 4580 | restriction endonuclease | |||
| ??? | M | M.HpySH002X (100% identity) | GTNNAC | M.HpySH010X |
| 4590 | ATP-dependent helicase | |||
| 5440 | 144 aa hypothetical protein | |||
| ??? | M | M.HpySH002ORF5430P (100% identity) | M.HpySH010ORF5445P | |
| 5450 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 5915 | HAD family hydrolase | |||
| 5920 | M | M.HpySH002I (100% identity) | CATG | M.HpySH010I |
| 5925 | IceA2 protein | |||
| 6635 | DNA methyltransferase | |||
| 6640 | R | HpySH002VIIIP (100% identity) | GANTC | HpySH010VIIIP |
| 6645 | M | M.HpySH014VIII (100% identity) | GANTC | M.HpySH010VIII |
| 6650 | N-6 DNA methylase | |||
| 6645 | site-specific DNA-methyltransferase | |||
| 6650 | RM | HpySH002ORF6635P (100% identity) | HpySH010ORF6650P | |
| 6655 | carboxylating nicotinate-nucleotide | |||
| 6705 | copper response regulator transcription factor | |||
| 6710 | R | HpySH002VIP (100% identity) | GAAGA | HpySH010VIP |
| 6715 | M | M1.HpySH002VI (100% identity) | GAAGA | M1.HpySH010VI |
| 6720 | M | M2.HpySH002VI (100% identity) | GAAGA | M2.HpySH010VI |
| 6725 | site-specific DNA-methyltransferase | |||
| 7010 | glycosyltransferase family 8 protein | |||
| 7015 | M | M.HpySH002VII (100% identity) | GAATTC | M.HpySH010VII |
| ??? | R | HpySH002VIIP (100% identity) | GAATTC | HpySH010VIIP |
| 7025 | UDP-N-acetylmuramate dehydrogenase | |||
| 7300 | DNA polymerase I | |||
| 7305 | S | S.HpySH002ORF7290P (100% identity) | S.HpySH010ORF7310P | |
| 7310 | RM | HpySH002ORF7290P (100% identity) | HpySH010ORF7310P | |
| 7315 | ComF family protein | |||
| 7515 | transcription termination/antitermination | |||
| 7520 | RM | HpySH002ORF7500P (100% identity) | HpySH010ORF7520P | |
| 7525 | type III restriction-modification system | |||
| 7700 | 67 aa hypothetical protein | |||
| 7705 | M | M.HpySH011XI (100% identity) | TGCA | M.HpySH010XII |
| 7710 | R | HpySH002XIIP (100% identity) | TGCA | HpySH010XIIP |
| 7715 | 92 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6720 | site-specific DNA-methyltransferase | |||
| ??? | M | M.HpySH002ORF6710P (100% identity) | M.HpySH010ORF6725P | |
| 6735 | R | HpySH002ORF6710P (100% identity) | HpySH010ORF6725P | |
| 6740 | rod shape-determining protein MreC | |||
| 7520 | Eco57I restriction-modification methylase | |||
| 7525 | R | HpySH002ORF7510P (100% identity) | HpySH010ORF7530P | |
| 7530 | M | M.HpySH002ORF7510P (100% identity) | M.HpySH010ORF7530P | |
| 7535 | ATP-dependent DNA helicase RecG | |||