Helicobacter pylori SHIM-011 |
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Putative Helicobacter pylori SHIM-011 RM systems
Ref: Gutierrez-Escobar,A.J. et al. Front Microbiol 11, 601839 (2020)
REBASE ref # 31890
Complete sequence: 1,609,650 bp
GenBank #: CP051504
REBASE acronym: HpySH011
Org_num: 48234
All begin HG563_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2295 | RNA degradosome polyphosphate kinase | |||
| 2305 | S | S.HpySORF2270P (100% identity) | S.HpySH011ORF2310P | |
| 2310 | M | M.HpyAs004ORF2240P (99% identity) | M.HpySH011ORF2310P | |
| ??? | R | HpySORF2270P (98% identity) | HpySH011ORF2310P | |
| 2325 | motility associated factor glycosyltransferase | |||
| 2585 | DNA cytosine methyltransferase | |||
| 2590 | M | M.HpySH014XIII (100% identity) | GAANNNNNNNRTC | M.HpySH011XII |
| 2595 | S | S.HpyC027XVI (98% identity) | GAANNNNNNNRTC | S.HpySH011XII |
| 2600 | R | Hpy169ORF4350P (98% identity) | GAANNNNNNNRTC | HpySH011XIIP |
| 2605 | N-acetylneuraminate synthase | |||
| 2890 | cadmium-translocating P-type ATPase | |||
| 2895 | S | S.HpySORF2560P (70% identity) | S.HpySH011ORF2895P | |
| 2900 | outer membrane beta-barrel protein HofF | |||
| 6800 | nickel-binding protein HpnL | |||
| 6805 | S | S.HpySP804ORF7330P (96% identity) | S.HpySH011ORF6805P | |
| 6810 | formyltetrahydrofolate deformylase | |||
| 7315 | FAD-dependent thymidylate synthase | |||
| 7320 | S | S.HpyC001ORF7005P (96% identity) | S.HpySH011ORF7325P | |
| 7325 | M | M.HpySORF7890P (99% identity) | M.HpySH011ORF7325P | |
| 7330 | R | HpySORF7890P (99% identity) | HpySH011ORF7325P | |
| 7335 | M48 family metallopeptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 245 | agmatine/peptidylarginine deiminase | |||
| 250 | M | M1.HpySORF245P (100% identity) | CCTC | M1.HpySH011V |
| 255 | DNA cytosine methyltransferase | |||
| 260 | M | M2.HpySORF245P (99% identity) | CCTC | M2.HpySH011VP |
| 265 | R | HpySORF245P (97% identity) | CCTC | HpySH011VP |
| 270 | DNA cytosine methyltransferase | |||
| 430 | ACP S-malonyltransferase | |||
| 440 | R | HpySORF465P (100% identity) | GATC | HpySH011VIIIP |
| 445 | M | M.Hpy464ORF430P (99% identity) | GATC | M.HpySH011VIII |
| 450 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 1245 | exodeoxyribonuclease VII large subunit | |||
| 1250 | M | M.HpySORF1350P (61% identity) | M.HpySH011ORF1250P | |
| 1255 | 254 aa hypothetical protein | |||
| 1405 | site-specific integrase | |||
| 1410 | M | M.HpyTW16II (39% identity) | M.HpySH011ORF1410P | |
| 1415 | 148 aa hypothetical protein | |||
| 1415 | 148 aa hypothetical protein | |||
| 1420 | R | HpyPU007VP (96% identity) | CCGG | HpySH011IVP |
| 1425 | M | M.HpySH007IV (99% identity) | CCGG | M.HpySH011IV |
| 1430 | AAA family ATPase | |||
| 1660 | polysaccharide deacetylase | |||
| 1665 | R | HpySORF1620P (100% identity) | CTNAG | HpySH011VIP |
| 1670 | M | M.Hpyfe124ORF5400P (100% identity) | CTNAG | M.HpySH011VI |
| 1675 | 118 aa hypothetical protein | |||
| 1865 | elongation factor 4 | |||
| 1870 | M | M.Hpyoh1ORF4535P (100% identity) | M.HpySH011ORF1870P | |
| 1875 | 133 aa hypothetical protein | |||
| 2385 | Hop family outer membrane protein HopJ/HopK | |||
| 2390 | M | M.HpyAs004III (98% identity) | ATTAAT | M.HpySH011III |
| 2395 | glycosyltransferase family 9 protein | |||
| 2400 | translational GTPase TypA | |||
| 2405 | M | M.HpyPE11VI (99% identity) | ACNGT | M.HpySH011II |
| 2410 | R | HpySORF2365P (100% identity) | ACNGT | HpySH011IIP |
| 2415 | DNA cytosine methyltransferase | |||
| 2410 | GIY-YIG nuclease family protein | |||
| 2415 | M | M.HpySORF2375P (100% identity) | ACGT | M.HpySH011ORF2415P |
| ??? | R | HpySORF2375P (100% identity) | ACGT | HpySH011ORF2415P |
| 2430 | catalase | |||
| 2575 | phosphatase PAP2 family protein | |||
| 2580 | R | HpySH014ORF4180P (100% identity) | HpySH011ORF2585P | |
| 2585 | M | M.HpySORF2550P (100% identity) | M.HpySH011ORF2585P | |
| 2590 | type I restriction-modification system subunit | |||
| 3445 | outer membrane protein | |||
| 3450 | RM | HpyAs010ORF3275P (95% identity) | HpySH011ORF3450P | |
| 3455 | (Fe-S)-binding protein | |||
| 4465 | flagellar hook protein FlgE | |||
| ??? | R | HpyAs006VIIIP (100% identity) | GTNNAC | HpySH011IXP |
| ??? | M | M.HpySORF4790P (100% identity) | GTNNAC | M.HpySH011IX |
| 4480 | ATP-dependent helicase | |||
| 5180 | acetyl-CoA carboxylase biotin carboxylase | |||
| 5185 | M | M.HpySORF5570P (100% identity) | TCNNGA | M.HpySH011X |
| 5190 | R | HpySORF5570P (100% identity) | TCNNGA | HpySH011XP |
| 5195 | Laminin subunit alpha-2 precursor | |||
| 5365 | 144 aa hypothetical protein | |||
| ??? | M | M.HpySORF5770P (97% identity) | M.HpySH011ORF5370P | |
| 5375 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 5810 | HAD family hydrolase | |||
| 5815 | M | M.HpySORF6255P (100% identity) | CATG | M.HpySH011I |
| 5820 | IceA2 protein | |||
| 6505 | DNA methyltransferase | |||
| 6510 | R | HpySH014VIIIP (99% identity) | GANTC | HpySH011VIIP |
| 6515 | M | M.HpySORF7000P (100% identity) | GANTC | M.HpySH011VII |
| 6520 | DNA methyltransferase | |||
| 6520 | DNA methyltransferase | |||
| 6525 | RM | Hpy21AORFSP (86% identity) | HpySH011ORF6525P | |
| 6530 | carboxylating nicotinate-nucleotide | |||
| 6580 | copper response regulator transcription factor | |||
| 6585 | R | HpySORF7070P (99% identity) | HpySH011ORF6585P | |
| 6590 | EcoRV family type II restriction endonuclease | |||
| 6585 | restriction endonuclease | |||
| 6590 | R | HpyPU008ORF6790P (100% identity) | HpySH011ORF6595P | |
| 6595 | M | M.HpySH014ORF6590P (100% identity) | M.HpySH011ORF6595P | |
| 6600 | site-specific DNA-methyltransferase | |||
| 7010 | DNA polymerase I | |||
| 7015 | S | S.HpyAs010ORF7195P (69% identity) | S.HpySH011ORF7020P | |
| 7020 | RM | HpyAs009ORF7105P (99% identity) | HpySH011ORF7020P | |
| 7025 | ComF family protein | |||
| 7245 | 174 aa hypothetical protein | |||
| 7250 | RM | HpySORF7805P (98% identity) | HpySH011ORF7250P | |
| 7255 | type III restriction-modification system | |||
| 7410 | 67 aa hypothetical protein | |||
| 7415 | M | M.HpySH010XII (100% identity) | TGCA | M.HpySH011XI |
| 7420 | R | HpySORF7990P (100% identity) | TGCA | HpySH011XIP |
| 7425 | 175 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6595 | Dam family site-specific | |||
| ??? | M | M.Hpy464ORF6635P (98% identity) | M.HpySH011ORF6600P | |
| 6610 | R | Hpy464ORF6635P (98% identity) | HpySH011ORF6600P | |
| 6615 | rod shape-determining protein MreC | |||
| 6660 | DNA/RNA non-specific endonuclease | |||
| 6665 | M | M.HpySORF7155P (99% identity) | M.HpySH011ORF6665P | |
| 6670 | R | HpyPU004ORF6590P (96% identity) | HpySH011ORF6665P | |
| 6675 | biotin synthase | |||
| 7250 | class I SAM-dependent DNA methyltransferase | |||
| 7255 | R | HpyAs005ORF7350P (99% identity) | HpySH011ORF7260P | |
| 7260 | M | M.HpyJSHR6ORF70P (96% identity) | M.HpySH011ORF7260P | |
| 7265 | ATP-dependent DNA helicase RecG | |||