Helicobacter pylori PUNO-006 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori PUNO-006 RM systems
Ref: Gutierrez-Escobar,A.J. et al. Front Microbiol 11, 601839 (2020)
REBASE ref # 31890
Complete sequence: 1,654,099 bp
GenBank #: CP051498
REBASE acronym: HpyPU006
Org_num: 48226
All begin HG569_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2175 | RNA degradosome polyphosphate kinase | |||
| 2185 | S | S.HpyPU002III (98% identity) | CCANNNNNNTC | S.HpyPU006ORF2190P |
| 2190 | M | M.HpyH018ORF2145P (97% identity) | CCANNNNNNTC | M.HpyPU006ORF2190P |
| 2195 | R | HpyIS2ORF2145P (88% identity) | CCANNNNNNTC | HpyPU006ORF2190P |
| 2200 | motility associated factor glycosyltransferase | |||
| 2740 | cadmium-translocating P-type ATPase | |||
| 2745 | S | S.HpyLI29ORF4065P (94% identity) | S.HpyPU006ORF2745P | |
| 2750 | outer membrane beta-barrel protein HofF | |||
| 6950 | nickel-binding protein HpnL | |||
| 6955 | S | S.HpyBGR7ORF7155P (97% identity) | S.HpyPU006ORF6955P | |
| 6960 | formyltetrahydrofolate deformylase | |||
| 7485 | cag pathogenicity island protein | |||
| 7490 | S | S.HpyUM111ORF6770P (38% identity) | S2.HpyPU006ORF7500P | |
| 7495 | S | S.HpyPE117XIV (46% identity) | S1.HpyPU006ORF7500P | |
| 7500 | M | M.HpyPE103ORF7520P (97% identity) | M.HpyPU006ORF7500P | |
| 7505 | R | HpySH014VIP (98% identity) | HpyPU006ORF7500P | |
| 7510 | M48 family metallopeptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 250 | agmatine/peptidylarginine deiminase | |||
| 255 | M | M1.HpyME40VII (98% identity) | CCTC | M1.HpyPU006ORF255P |
| 260 | M | M2.HpyCA7IVP (99% identity) | CCTC | M2.HpyPU006ORF255P |
| 265 | R | HpyPU001ORF250P (82% identity) | CCTC | HpyPU006ORF255P |
| 270 | sodium/proline symporter PutP | |||
| 445 | ACP S-malonyltransferase | |||
| 455 | R | HpyT028IXP (96% identity) | GATC | HpyPU006XP |
| 460 | M | M.Hpy4105ORFHP (96% identity) | GATC | M.HpyPU006X |
| 465 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 1280 | exodeoxyribonuclease VII large subunit | |||
| ??? | M | M.HpyUM023ORF3260P (96% identity) | TCGA | M.HpyPU006ORF1285P |
| 1290 | 204 aa hypothetical protein | |||
| 1290 | 204 aa hypothetical protein | |||
| 1295 | R | Hpy1766ORFTP (96% identity) | CCGG | HpyPU006VP |
| 1300 | M | M.HpySH014ORF1415P (99% identity) | CCGG | M.HpyPU006V |
| 1305 | AAA family ATPase | |||
| 1535 | polysaccharide deacetylase | |||
| 1540 | R | HpyPE19VIIIP (97% identity) | CTNAG | HpyPU006VIP |
| 1545 | M | M.HpyOK34ORFRP (100% identity) | CTNAG | M.HpyPU006VI |
| 1550 | 119 aa hypothetical protein | |||
| 1740 | elongation factor 4 | |||
| 1745 | M | M.HpyKG7ORF1745P (100% identity) | M.HpyPU006ORF1745P | |
| 1750 | 133 aa hypothetical protein | |||
| 1920 | Sec-independent protein translocase subunit | |||
| 1930 | M | M.HpyPU002ORF1895P (99% identity) | M.HpyPU006ORF1930P | |
| 1935 | Holliday junction branch migration DNA helicase | |||
| 2260 | Hop family outer membrane protein HopJ/HopK | |||
| 2265 | M | M.HpyOK307ORFYP (98% identity) | ATTAAT | M.HpyPU006III |
| 2270 | glycosyltransferase family 9 protein | |||
| 2275 | translational GTPase TypA | |||
| 2280 | M | M.HpyHK721ORFXP (99% identity) | ACNGT | M.HpyPU006II |
| 2285 | R | HpyPU002IIP (97% identity) | ACNGT | HpyPU006IIP |
| 2290 | DNA cytosine methyltransferase | |||
| 2285 | GIY-YIG nuclease family protein | |||
| 2290 | M | M.HpyC101ORF2445P (98% identity) | ACGT | M.HpyPU006ORF2290P |
| 2295 | R | HpyPO108ORF4480P (94% identity) | ACGT | HpyPU006ORF2290P |
| 2300 | catalase | |||
| 2445 | phosphatase PAP2 family protein | |||
| 2450 | R | HpySORF2550P (99% identity) | HpyPU006ORF2455P | |
| 2455 | M | M.HpysHP34ORF6260P (99% identity) | M.HpyPU006ORF2455P | |
| 2460 | type I restriction-modification system subunit M | |||
| 3455 | outer membrane protein | |||
| 3460 | RM | HpyPE111ORF3290P (94% identity) | HpyPU006ORF3460P | |
| 3465 | (Fe-S)-binding protein | |||
| 4580 | restriction endonuclease | |||
| ??? | M | M.HpyPU009X (99% identity) | GTNNAC | M.HpyPU006XI |
| 4590 | ATP-dependent helicase | |||
| 5305 | FkbM family methyltransferase | |||
| 5310 | M | M.HpyJ016VI (99% identity) | TCNNGA | M.HpyPU006XII |
| ??? | R | HpyPU001IXP (95% identity) | TCNNGA | HpyPU006XIIP |
| 5325 | Laminin subunit alpha-2 precursor | |||
| 5495 | 144 aa hypothetical protein | |||
| ??? | M | M.Hpy1768ORFVP (97% identity) | M.HpyPU006ORF5500P | |
| 5505 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 5960 | HAD family hydrolase | |||
| 5965 | M | M.HpyPU001I (98% identity) | CATG | M.HpyPU006I |
| ??? | R | HpyMT5124IP (96% identity) | CATG | HpyPU006IP |
| 5975 | serine O-acetyltransferase | |||
| 6655 | PDZ domain-containing protein | |||
| 6660 | R | HpyPU007VIIIP (96% identity) | GANTC | HpyPU006IXP |
| 6665 | M | M.HpyPE121VIII (99% identity) | GANTC | M.HpyPU006IX |
| 6670 | N-6 DNA methylase | |||
| 6665 | site-specific DNA-methyltransferase | |||
| 6670 | RM | HpyH018ORF6550P (85% identity) | HpyPU006ORF6670P | |
| 6675 | carboxylating nicotinate-nucleotide | |||
| 6725 | copper response regulator transcription factor | |||
| 6730 | R | Hpy1681ORFFP (96% identity) | GAAGA | HpyPU006VIIP |
| 6735 | M | M1.HpySH010VI (99% identity) | GAAGA | M1.HpyPU006VII |
| 6740 | M | M2.Hpy135ORF6990P (98% identity) | GAAGA | M2.HpyPU006VII |
| 6745 | site-specific DNA-methyltransferase | |||
| 6875 | glycosyltransferase family 8 protein | |||
| 6880 | M | M.HpySH010VII (99% identity) | GAATTC | M.HpyPU006VIII |
| 6885 | R | HpySH010VIIP (98% identity) | GAATTC | HpyPU006VIIIP |
| 6890 | UDP-N-acetylmuramate dehydrogenase | |||
| 7150 | DNA polymerase I | |||
| 7155 | C | C.Hpyfe73ORF275P (100% identity) | C.HpyPU006ORF7160P | |
| 7160 | M | M1.HpySP706X (100% identity) | GGATG | M1.HpyPU006ORF7160P |
| 7165 | M | M2.Hpy4ORF7205P (99% identity) | GGATG | M2.HpyPU006ORF7160P |
| 7170 | R | Hpy4ORF7205P (99% identity) | GGATG | HpyPU006ORF7160P |
| 7175 | ComF family protein | |||
| 7300 | LptF/LptG family permease | |||
| ??? | M | M2.Hpyfe88ORF155P (77% identity) | CCATC | M1.HpyPU006IV |
| 7310 | M | M2.HpyPU008III (99% identity) | CCATC | M2.HpyPU006IV |
| 7315 | R | HpyPU004IVP (98% identity) | CCATC | HpyPU006IVP |
| 7320 | outer membrane protein | |||
| 7400 | RNA-directed DNA polymerase | |||
| 7405 | RM | Hpy13207ORF1364P (85% identity) | HpyPU006ORF7405P | |
| 7410 | 718 aa hypothetical protein | |||
| 7535 | DUF262 domain-containing protein | |||
| 7540 | M | M.HpyPE11XIII (97% identity) | M.HpyPU006ORF7540P | |
| 7545 | 232 aa hypothetical protein | |||
| 7605 | 67 aa hypothetical protein | |||
| 7610 | M | M.Hpy20ORF7835P (100% identity) | TGCA | M.HpyPU006XIII |
| 7615 | R | HpyCHN5XP (98% identity) | TGCA | HpyPU006XIIIP |
| 7620 | elongation factor Ts | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6740 | site-specific DNA-methyltransferase | |||
| 6745 | M | M.HpyLIM7ORFXP (96% identity) | M.HpyPU006ORF6745P | |
| 6750 | R | Hpy4ORF4130P (95% identity) | HpyPU006ORF6745P | |
| 6755 | rod shape-determining protein MreC | |||
| 6805 | DNA/RNA non-specific endonuclease | |||
| 6810 | M | M.HpyB45ORFKP (95% identity) | M.HpyPU006ORF6810P | |
| 6815 | R | HpyC113ORF330P (89% identity) | HpyPU006ORF6810P | |
| 6820 | biotin synthase | |||
| 7410 | 718 aa hypothetical protein | |||
| 7415 | R | HpyCOL204ORF7170P (94% identity) | HpyPU006ORF7420P | |
| ??? | M | M.Hpy112ORF7680P (97% identity) | M.HpyPU006ORF7420P | |
| 7430 | ATP-dependent DNA helicase RecG | |||