Helicobacter pylori ASHA-008 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori ASHA-008 RM systems
Ref: Gutierrez-Escobar,A.J. et al. Front Microbiol 11, 601839 (2020)
REBASE ref # 31890
Complete sequence: 1,627,715 bp
GenBank #: CP051510
REBASE acronym: HpyAs008
Org_num: 48201
All begin HG557_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2110 | RNA degradosome polyphosphate kinase | |||
| 2120 | S | S.HpyAs010ORF2140P (100% identity) | GACNNNNNTC | S.HpyAs008XIV |
| 2125 | M | M.HpyAs010ORF2140P (100% identity) | GACNNNNNTC | M.HpyAs008XIV |
| 2130 | R | HpyAs010ORF2140P (99% identity) | GACNNNNNTC | HpyAs008XIVP |
| 2135 | motility associated factor glycosyltransferase | |||
| 2365 | DNA cytosine methyltransferase | |||
| 2370 | M | M.HpyAs010ORF2390P (100% identity) | CAANNNNNNNNTGC | M.HpyAs008XII |
| 2375 | S | S.HpyAs010ORF2390P (75% identity) | CAANNNNNNNNTGC | S.HpyAs008XII |
| 2380 | R | HpyAs010ORF2390P (100% identity) | CAANNNNNNNNTGC | HpyAs008XIIP |
| 2385 | hydroxyethylthiazole kinase | |||
| 2660 | cadmium-translocating P-type ATPase | |||
| 2665 | S | S.HpyC122X (67% identity) | AACNNNNNRTC | S.HpyAs008XV |
| 2670 | outer membrane beta-barrel protein HofF | |||
| 6920 | nickel-binding protein HpnL | |||
| 6925 | S | S.HpyAs010ORF6995P (100% identity) | GRNAANNNNNNNTTC | S.HpyAs008XVI |
| 6930 | formyltetrahydrofolate deformylase | |||
| 7400 | FAD-dependent thymidylate synthase | |||
| 7405 | S | S.HpyAs010ORF7495P (100% identity) | GARANNNNNNNTTC | S.HpyAs008XIII |
| 7410 | CAAX protease | |||
| 7415 | M | M.HpyAs010ORF7495P (100% identity) | GARANNNNNNNTTC | M.HpyAs008XIII |
| 7420 | R | HpyAs010ORF7495P (99% identity) | GARANNNNNNNTTC | HpyAs008XIIIP |
| 7425 | M48 family metallopeptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 240 | agmatine deiminase | |||
| 245 | M | M1.HpyAs010V (100% identity) | CCTC | M1.HpyAs008VI |
| 250 | M | M2.HpyAs010VP (100% identity) | CCTC | M2.HpyAs008VIP |
| 255 | R | HpyAs010VP (100% identity) | CCTC | HpyAs008VIP |
| 260 | sodium/proline symporter PutP | |||
| 440 | ACP S-malonyltransferase | |||
| 450 | R | HpyAs010VIP (100% identity) | GATC | HpyAs008VIIP |
| 455 | M | M.HpyAs010VI (100% identity) | GATC | M.HpyAs008VII |
| 460 | alpha-1,2-fucosyltransferase | |||
| 1240 | exodeoxyribonuclease VII large subunit | |||
| ??? | M | M.HpyAs010ORF1260P (100% identity) | TCGA | M.HpyAs008IX |
| 1250 | 204 aa hypothetical protein | |||
| 1250 | 204 aa hypothetical protein | |||
| 1255 | R | HpyAs010ORF1275P (100% identity) | CCGG | HpyAs008IVP |
| 1260 | M | M.HpyAs010ORF1275P (100% identity) | CCGG | M.HpyAs008IV |
| 1265 | AAA domain-containing protein | |||
| 2195 | Hop family outer membrane protein HopJ/HopK | |||
| 2200 | M | M.HpyAs010III (100% identity) | ATTAAT | M.HpyAs008III |
| 2205 | glycosyltransferase family 9 protein | |||
| 2210 | translational GTPase TypA | |||
| 2215 | M | M.HpyAs010II (100% identity) | ACNGT | M.HpyAs008II |
| 2220 | R | HpyAs010IIP (100% identity) | ACNGT | HpyAs008IIP |
| 2225 | DNA cytosine methyltransferase | |||
| 2220 | GIY-YIG nuclease family protein | |||
| 2225 | M | M.HpyAs010ORF2245P (100% identity) | ACGT | M.HpyAs008ORF2225P |
| 2230 | R | HpyAs010ORF2245P (100% identity) | ACGT | HpyAs008ORF2225P |
| 2235 | catalase | |||
| 2355 | DNA-binding protein | |||
| 2360 | R | HpyAs010ORF2385P (100% identity) | HpyAs008ORF2365P | |
| 2365 | M | M.HpyK022ORF4175P (100% identity) | M.HpyAs008ORF2365P | |
| 2370 | type I restriction-modification system subunit | |||
| 3160 | 3-5 exonuclease | |||
| 3165 | R | Hpyfe65ORF3785P (100% identity) | CCNNGG | HpyAs008VP |
| 3170 | M | M.HpyAs010IV (100% identity) | CCNNGG | M.HpyAs008V |
| 3175 | 3-5 exonuclease | |||
| 3250 | 450 aa hypothetical protein | |||
| 3255 | RM | HpyAs010ORF3275P (100% identity) | HpyAs008ORF3255P | |
| 3260 | (Fe-S)-binding protein | |||
| 4435 | flagellar hook protein FlgE | |||
| 4440 | R | HpyAs010VIIP (100% identity) | GTNNAC | HpyAs008VIIIP |
| ??? | M | M.HpyAs010VII (100% identity) | GTNNAC | M.HpyAs008VIII |
| 4450 | ATP-dependent helicase | |||
| 5285 | acetyl-CoA carboxylase biotin carboxylase | |||
| 5290 | M | M.HpyAs010VIII (100% identity) | TCNNGA | M.HpyAs008X |
| 5295 | R | HpyAs010VIIIP (100% identity) | TCNNGA | HpyAs008XP |
| 5300 | Laminin subunit alpha-2 precursor | |||
| 5475 | 144 aa hypothetical protein | |||
| ??? | M | M.HpyAs010ORF5530P (100% identity) | M.HpyAs008ORF5480P | |
| 5485 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 5935 | HAD family hydrolase | |||
| 5940 | M | M.HpyAs010I (100% identity) | CATG | M.HpyAs008I |
| 5945 | IceA2 protein | |||
| 6640 | PDZ domain-containing protein | |||
| ??? | RM | HpySH014ORF6515P (95% identity) | HpyAs008ORF6645P | |
| 6650 | carboxylating nicotinate-nucleotide | |||
| 6710 | site-specific DNA-methyltransferase | |||
| 6715 | R | HpyAs010ORF6785P (100% identity) | HpyAs008ORF6720P | |
| 6720 | M | M.HpyAs010ORF6785P (100% identity) | M.HpyAs008ORF6720P | |
| 6725 | site-specific DNA-methyltransferase | |||
| 7115 | DNA polymerase I | |||
| 7120 | S | S.HpyID5ORF7045P (94% identity) | S.HpyAs008ORF7125P | |
| 7125 | RM | HpyAs010ORF7195P (100% identity) | HpyAs008ORF7125P | |
| 7130 | ComF family protein | |||
| 7330 | transcription termination/antitermination | |||
| 7335 | RM | HpyAs010ORF7405P (100% identity) | HpyAs008ORF7335P | |
| 7340 | DEAD/DEAH box helicase family protein | |||
| 7500 | 67 aa hypothetical protein | |||
| 7505 | M | M.HpyAs010IX (100% identity) | TGCA | M.HpyAs008XI |
| 7510 | R | HpyAs010IXP (100% identity) | TGCA | HpyAs008XIP |
| 7515 | 107 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6720 | Dam family site-specific | |||
| 6725 | M | M.HpyTW17ORF195P (96% identity) | M.HpyAs008ORF6725P | |
| 6730 | R | HpyAs010ORF6790P (100% identity) | HpyAs008ORF6725P | |
| 6735 | rod shape-determining protein MreC | |||
| 6780 | DNA/RNA non-specific endonuclease | |||
| 6785 | M | M.HpyAs010ORF6855P (100% identity) | M.HpyAs008ORF6785P | |
| 6790 | R | HpyAs010ORF6855P (100% identity) | HpyAs008ORF6785P | |
| 6795 | biotin synthase | |||
| 7335 | class I SAM-dependent DNA methyltransferase | |||
| 7340 | R | HpyAs010ORF7415P (100% identity) | HpyAs008ORF7345P | |
| 7345 | M | M.HpyAs010ORF7415P (100% identity) | M.HpyAs008ORF7345P | |
| 7350 | ATP-dependent DNA helicase RecG | |||