Helicobacter pylori ASHA-009 |
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Putative Helicobacter pylori ASHA-009 RM systems
Ref: Gutierrez-Escobar,A.J. et al. Front Microbiol 11, 601839 (2020)
REBASE ref # 31890
Complete sequence: 1,611,185 bp
GenBank #: CP051509
REBASE acronym: HpyAs009
Org_num: 48202
All begin HG558_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3660 | outer membrane beta-barrel protein HofF | |||
| 3665 | S | S.Hpy464ORF2800P (66% identity) | S.HpyAs009ORF3665P | |
| 3670 | 63 aa hypothetical protein | |||
| 4290 | motility associated factor glycosyltransferase | |||
| 4295 | R | Hpy169ORF2385P (96% identity) | GACNNNNNTG | HpyAs009VP |
| 4300 | M | M.HpyPU002III (98% identity) | GACNNNNNTG | M.HpyAs009V |
| 4305 | S | S.Hpy30XIV (98% identity) | GACNNNNNTG | S.HpyAs009V |
| 4315 | RNA degradosome polyphosphate kinase | |||
| 7390 | FAD-dependent thymidylate synthase | |||
| 7395 | S | S.HpyG63ORFEP (96% identity) | S.HpyAs009ORF7400P | |
| 7400 | M | M.Hpy169ORF7565P (99% identity) | M.HpyAs009ORF7400P | |
| 7405 | R | Hpy464ORF7385P (98% identity) | HpyAs009ORF7400P | |
| 7410 | M48 family metallopeptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 245 | agmatine deiminase | |||
| 250 | M | M1.Hpy464ORF245P (100% identity) | CCTC | M1.HpyAs009ORF250P |
| 255 | M | M2.Hpy464ORF245P (100% identity) | CCTC | M2.HpyAs009ORF250P |
| 260 | R | Hpy464ORF245P (91% identity) | CCTC | HpyAs009ORF250P |
| 265 | DNA cytosine methyltransferase | |||
| 450 | ACP S-malonyltransferase | |||
| 460 | R | Hpy464ORF430P (99% identity) | GATC | HpyAs009ORF465P |
| 465 | M | M.HpyAs006VII (99% identity) | GATC | M.HpyAs009ORF465P |
| 470 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 1085 | flagellar biosynthesis anti-sigma factor FlgM | |||
| ??? | M | M.HpySORF5770P (96% identity) | M.HpyAs009ORF1090P | |
| 1095 | 144 aa hypothetical protein | |||
| 1265 | Laminin subunit alpha-2 precursor | |||
| 1270 | R | HpyAs002XIP (100% identity) | TCNNGA | HpyAs009XIIP |
| 1275 | M | M.Hpy464ORF5180P (100% identity) | TCNNGA | M.HpyAs009XII |
| 1280 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2110 | ATP-dependent helicase | |||
| ??? | M | M.HpySORF4790P (99% identity) | GTNNAC | M.HpyAs009VI |
| ??? | R | HpySH011IXP (99% identity) | GTNNAC | HpyAs009VIP |
| 2125 | flagellar hook protein FlgE | |||
| 3080 | (Fe-S)-binding protein | |||
| 3085 | RM | Hpy464ORF3445P (65% identity) | HpyAs009ORF3085P | |
| 3090 | IS607 family transposase | |||
| 4180 | 63 aa hypothetical protein | |||
| ??? | R | HpyLIM10ORF2380P (96% identity) | ACGT | HpyAs009ORF4195P |
| 4195 | M | M.Hpy169ORF2495P (99% identity) | ACGT | M.HpyAs009ORF4195P |
| 4200 | 54 aa hypothetical protein | |||
| 4195 | DNA cytosine methyltransferase | |||
| ??? | R | HpySG38IIP (98% identity) | ACNGT | HpyAs009IIP |
| 4210 | M | M.HpySP207II (99% identity) | ACNGT | M.HpyAs009II |
| 4215 | translational GTPase TypA | |||
| 4220 | glycosyltransferase family 9 protein | |||
| 4225 | M | M.HpyPU001III (98% identity) | ATTAAT | M.HpyAs009III |
| 4230 | Hop family outer membrane protein HopJ/HopK | |||
| 4740 | 133 aa hypothetical protein | |||
| 4745 | M | M.HpyPU006ORF1745P (100% identity) | M.HpyAs009ORF4745P | |
| 4750 | elongation factor 4 | |||
| 5180 | AAA domain-containing protein | |||
| 5185 | M | M.HpyAs010ORF1275P (100% identity) | CCGG | M.HpyAs009VIII |
| 5190 | R | HpyPU006VP (97% identity) | CCGG | HpyAs009VIIIP |
| 5195 | 204 aa hypothetical protein | |||
| 5195 | 204 aa hypothetical protein | |||
| ??? | M | M.HpySORF1350P (100% identity) | TCGA | M.HpyAs009XI |
| 5205 | exodeoxyribonuclease VII large subunit | |||
| 5865 | HAD family hydrolase | |||
| 5870 | M | M.HpySH014I (97% identity) | CATG | M.HpyAs009I |
| 5875 | IceA2 protein | |||
| 6560 | DNA methyltransferase | |||
| 6565 | R | HpySH010VIIIP (99% identity) | GANTC | HpyAs009XP |
| 6570 | M | M.HpyAs005IX (100% identity) | GANTC | M.HpyAs009X |
| 6575 | DNA methyltransferase | |||
| 6575 | DNA methyltransferase | |||
| ??? | RM | HpyAs006ORF6480P (93% identity) | HpyAs009ORF6580P | |
| 6590 | carboxylating nicotinate-nucleotide | |||
| 6640 | copper response regulator transcription factor | |||
| ??? | R | HpyG020XP (93% identity) | GAAGA | HpyAs009IXP |
| 6655 | M | M1.HpySH010VI (100% identity) | GAAGA | M1.HpyAs009IX |
| 6660 | M | M2.Hpyfe88ORF6905P (97% identity) | GAAGA | M2.HpyAs009IX |
| 6665 | site-specific DNA-methyltransferase | |||
| 6790 | glycosyltransferase family 8 protein | |||
| 6795 | R | HpyF234ORFSP (99% identity) | HpyAs009ORF6795P | |
| 6800 | DNA (cytosine-5-)-methyltransferase | |||
| 6795 | ThaI family type II restriction endonuclease | |||
| 6800 | M | M.HpyPU007ORF6720P (99% identity) | M.HpyAs009ORF6800P | |
| 6805 | UDP-N-acetylmuramate dehydrogenase | |||
| 7025 | cytochrome-c peroxidase | |||
| 7030 | R | HpyPE121ORF7010P (98% identity) | HpyAs009ORF7035P | |
| ??? | M | M2.HpyC028ORF7325P (97% identity) | M1.HpyAs009ORF7035P | |
| 7040 | M | M2.HpyC119ORF7265P (99% identity) | M2.HpyAs009ORF7035P | |
| 7045 | addiction module antidote protein | |||
| 7090 | DNA polymerase I | |||
| 7095 | S | S.HpyC002ORF7270P (87% identity) | S2.HpyAs009ORF7105P | |
| 7100 | S | S.HpyK112ORF6940P (50% identity) | S1.HpyAs009ORF7105P | |
| 7105 | RM | HpyAs006ORF7125P (99% identity) | HpyAs009ORF7105P | |
| 7110 | ComF family protein | |||
| 7235 | YjgP/YjgQ family permease | |||
| ??? | M | M1.Hpy464ORF7220P (77% identity) | CCATC | M1.HpyAs009IV |
| 7245 | M | M2.HpyPE121III (99% identity) | CCATC | M2.HpyAs009IV |
| 7250 | R | HpyPE121IIIP (97% identity) | CCATC | HpyAs009IVP |
| 7255 | outer membrane protein | |||
| 7320 | transcription termination/antitermination | |||
| 7325 | RM | HpySH007ORF7220P (71% identity) | HpyAs009ORF7325P | |
| 7330 | DEAD/DEAH box helicase family protein | |||
| 7490 | 67 aa hypothetical protein | |||
| 7495 | M | M.Hpy135ORF7840P (99% identity) | TGCA | M.HpyAs009VII |
| 7500 | R | HpySORF7990P (100% identity) | TGCA | HpyAs009VIIP |
| 7505 | 176 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6660 | site-specific DNA-methyltransferase | |||
| ??? | M | M.Hpy417ORF6735P (98% identity) | M.HpyAs009ORF6665P | |
| 6675 | R | Hpy464ORF6635P (98% identity) | HpyAs009ORF6665P | |
| 6680 | rod shape-determining protein MreC | |||
| 6725 | DNA/RNA non-specific endonuclease | |||
| 6730 | M | M.Hpy225ORF1420P (97% identity) | M.HpyAs009ORF6730P | |
| 6735 | R | HpyPE111ORF6655P (95% identity) | HpyAs009ORF6730P | |
| 6740 | biotin synthase | |||
| 7325 | class I SAM-dependent DNA methyltransferase | |||
| 7330 | R | HpyJ022ORF7125P (95% identity) | HpyAs009ORF7335P | |
| 7335 | M | M.HpyBR12ORF7105P (96% identity) | M.HpyAs009ORF7335P | |
| 7340 | ATP-dependent DNA helicase RecG | |||