Helicobacter pylori SHIM-002 |
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Putative Helicobacter pylori SHIM-002 RM systems
Ref: Gutierrez-Escobar,A.J. et al. Front Microbiol 11, 601839 (2020)
REBASE ref # 31890
Complete sequence: 1,675,432 bp
GenBank #: CP051507
REBASE acronym: HpySH002
Org_num: 48231
All begin HG560_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2420 | RNA degradosome polyphosphate kinase | |||
| 2430 | S | S.HpySH010ORF2440P (100% identity) | S.HpySH002ORF2435P | |
| 2435 | M | M.HpySH010ORF2440P (100% identity) | M.HpySH002ORF2435P | |
| 2440 | R | HpySH010ORF2440P (99% identity) | HpySH002ORF2435P | |
| 2445 | motility associated factor glycosyltransferase | |||
| 2980 | cadmium-translocating P-type ATPase | |||
| 2985 | S | S.HpySH010ORF2990P (100% identity) | CAANNNNNNNTTC | S.HpySH002ORF2985P |
| 2990 | outer membrane beta-barrel protein HofF | |||
| 7065 | nickel-binding protein HpnL | |||
| 7070 | S | S.HpySH010ORF7095P (100% identity) | S.HpySH002ORF7070P | |
| 7075 | formyltetrahydrofolate deformylase | |||
| 7565 | FAD-dependent thymidylate synthase | |||
| 7570 | S | S.HpySH010ORF7600P (100% identity) | S.HpySH002ORF7580P | |
| 7575 | CAAX protease | |||
| 7580 | M | M.HpySH010ORF7600P (100% identity) | M.HpySH002ORF7580P | |
| 7585 | R | HpySH010ORF7600P (100% identity) | HpySH002ORF7580P | |
| 7590 | M48 family metallopeptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 245 | AguA family protein | |||
| 250 | M | M1.HpySH010IV (100% identity) | CCTC | M1.HpySH002IV |
| 255 | M | M2.HpySH010IVP (100% identity) | CCTC | M2.HpySH002IVP |
| 260 | sodium/proline symporter PutP | |||
| 430 | ACP S-malonyltransferase | |||
| 440 | R | HpySH010IXP (100% identity) | GATC | HpySH002IXP |
| 445 | M | M.HpySH010IX (100% identity) | GATC | M.HpySH002IX |
| 450 | alpha-1,2-fucosyltransferase | |||
| 1550 | exodeoxyribonuclease VII large subunit | |||
| ??? | M | M.HpySH010XI (100% identity) | TCGA | M.HpySH002XI |
| 1560 | 204 aa hypothetical protein | |||
| 1560 | 204 aa hypothetical protein | |||
| ??? | R | HpySH010IIIP (100% identity) | CCGG | HpySH002IIIP |
| 1570 | M | M.HpySH010III (100% identity) | CCGG | M.HpySH002III |
| 1575 | AAA domain-containing protein | |||
| 1810 | polysaccharide deacetylase | |||
| 1815 | R | HpySORF1620P (100% identity) | CTNAG | HpySH002VP |
| 1820 | M | M.HpySH010V (100% identity) | CTNAG | M.HpySH002V |
| 1825 | 118 aa hypothetical protein | |||
| 1990 | elongation factor 4 | |||
| 1995 | M | M.HpySH014ORF1855P (100% identity) | M.HpySH002ORF1995P | |
| 2000 | 133 aa hypothetical protein | |||
| 2165 | Sec-independent protein translocase subunit | |||
| 2175 | M | M.HpySH010ORF2180P (100% identity) | M.HpySH002ORF2175P | |
| 2180 | Holliday junction branch migration DNA helicase | |||
| 2505 | Hop family outer membrane protein HopJ/HopK | |||
| 2510 | M | M.HpySH010II (100% identity) | ATTAAT | M.HpySH002II |
| 2515 | glycosyltransferase family 9 protein | |||
| 2520 | translational GTPase TypA | |||
| 2525 | M | M.HpySH010ORF2530P (100% identity) | M.HpySH002ORF2525P | |
| 2530 | catalase | |||
| 2680 | phosphatase PAP2 family protein | |||
| 2685 | R | HpySORF2550P (100% identity) | HpySH002ORF2690P | |
| 2690 | M | M.HpySH010ORF2695P (100% identity) | M.HpySH002ORF2690P | |
| 2695 | restriction endonuclease subunit M | |||
| 3560 | 449 aa hypothetical protein | |||
| 3565 | RM | HpySH010ORF3570P (100% identity) | HpySH002ORF3565P | |
| 3570 | (Fe-S)-binding protein | |||
| 4575 | restriction endonuclease | |||
| ??? | M | M.HpySH010X (100% identity) | GTNNAC | M.HpySH002X |
| 4585 | ATP-dependent helicase | |||
| 5425 | 144 aa hypothetical protein | |||
| ??? | M | M.HpySH010ORF5445P (100% identity) | M.HpySH002ORF5430P | |
| 5435 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 5900 | HAD family hydrolase | |||
| 5905 | M | M.HpySH010I (100% identity) | CATG | M.HpySH002I |
| 5910 | IceA2 protein | |||
| 6620 | DNA methyltransferase | |||
| 6625 | R | HpySH010VIIIP (100% identity) | GANTC | HpySH002VIIIP |
| 6630 | M | M.HpySH014VIII (100% identity) | GANTC | M.HpySH002VIII |
| 6635 | N-6 DNA methylase | |||
| 6630 | site-specific DNA-methyltransferase | |||
| 6635 | RM | HpySH010ORF6650P (100% identity) | HpySH002ORF6635P | |
| 6640 | carboxylating nicotinate-nucleotide | |||
| 6690 | copper response regulator transcription factor | |||
| 6695 | R | HpySH010VIP (100% identity) | GAAGA | HpySH002VIP |
| 6700 | M | M1.HpySH010VI (100% identity) | GAAGA | M1.HpySH002VI |
| 6705 | M | M2.HpySH010VI (100% identity) | GAAGA | M2.HpySH002VI |
| 6710 | site-specific DNA-methyltransferase | |||
| 6990 | glycosyltransferase family 8 protein | |||
| 6995 | M | M.HpySH010VII (100% identity) | GAATTC | M.HpySH002VII |
| ??? | R | HpySH010VIIP (100% identity) | GAATTC | HpySH002VIIP |
| 7005 | UDP-N-acetylmuramate dehydrogenase | |||
| 7280 | DNA polymerase I | |||
| 7285 | S | S.HpySH010ORF7310P (100% identity) | S.HpySH002ORF7290P | |
| 7290 | RM | HpySH010ORF7310P (100% identity) | HpySH002ORF7290P | |
| 7295 | ComF family protein | |||
| 7495 | transcription termination/antitermination | |||
| 7500 | RM | HpySH010ORF7520P (100% identity) | HpySH002ORF7500P | |
| 7505 | DEAD/DEAH box helicase family protein | |||
| 7680 | 67 aa hypothetical protein | |||
| 7685 | M | M.HpySH011XI (100% identity) | TGCA | M.HpySH002XII |
| 7690 | R | HpySH010XIIP (100% identity) | TGCA | HpySH002XIIP |
| 7695 | 92 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6705 | site-specific DNA-methyltransferase | |||
| 6710 | M | M.HpySH010ORF6725P (100% identity) | M.HpySH002ORF6710P | |
| 6715 | R | HpySH010ORF6725P (100% identity) | HpySH002ORF6710P | |
| 6720 | rod shape-determining protein MreC | |||
| 7500 | class I SAM-dependent DNA methyltransferase | |||
| 7505 | R | HpySH010ORF7530P (100% identity) | HpySH002ORF7510P | |
| 7510 | M | M.HpySH010ORF7530P (100% identity) | M.HpySH002ORF7510P | |
| 7515 | ATP-dependent DNA helicase RecG | |||