Helicobacter pylori SHIM-007 |
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Putative Helicobacter pylori SHIM-007 RM systems
Ref: Gutierrez-Escobar,A.J. et al. Front Microbiol 11, 601839 (2020)
REBASE ref # 31890
Complete sequence: 1,592,792 bp
GenBank #: CP051506
REBASE acronym: HpySH007
Org_num: 48232
All begin HG561_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2290 | RNA degradosome polyphosphate kinase | |||
| 2300 | S | S.HpySH010ORF2440P (100% identity) | S.HpySH007ORF2305P | |
| 2305 | M | M.Hpy20ORF2535P (99% identity) | M.HpySH007ORF2305P | |
| ??? | R | HpySH014ORF2290P (98% identity) | HpySH007ORF2305P | |
| 2320 | motility associated factor glycosyltransferase | |||
| 2585 | DNA (cytosine-5-)-methyltransferase | |||
| 2590 | M | M.Hpy169ORF4350P (100% identity) | M.HpySH007ORF2590P | |
| 2595 | S | S.Hpyfe51ORF4665P (96% identity) | S.HpySH007ORF2590P | |
| 2600 | R | HpySH014XIIIP (99% identity) | HpySH007ORF2590P | |
| 2605 | N-acetylneuraminate synthase | |||
| 2890 | cadmium-translocating P-type ATPase | |||
| 2895 | S | S.Hpy112ORF3055P (98% identity) | CAANNNNNNNTTC | S.HpySH007ORF2895P |
| 2900 | outer membrane beta-barrel protein HofF | |||
| 6790 | nickel-binding protein HpnL | |||
| 6795 | S | S.HpyI016ORF7455P (94% identity) | S.HpySH007ORF6795P | |
| 6800 | formyltetrahydrofolate deformylase | |||
| 7285 | FAD-dependent thymidylate synthase | |||
| 7290 | S | S.HpyTW22ORF7085P (97% identity) | CRTANNNNNNNTG | S.HpySH007ORF7295P |
| 7295 | M | M.HpyAs009ORF7400P (98% identity) | CRTANNNNNNNTG | M.HpySH007ORF7295P |
| 7300 | R | HpyAs004XIIIP (99% identity) | CRTANNNNNNNTG | HpySH007ORF7295P |
| 7305 | M48 family metallopeptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 240 | agmatine deiminase | |||
| 245 | M | M1.HpyPE111V (99% identity) | CCTC | M1.HpySH007V |
| 250 | M | M2.HpySORF245P (99% identity) | CCTC | M2.HpySH007VP |
| 255 | R | HpyPE140VIP (97% identity) | CCTC | HpySH007VP |
| 260 | sodium/proline symporter PutP | |||
| 415 | ACP S-malonyltransferase | |||
| 425 | R | Hpy417ORF440P (97% identity) | GATC | HpySH007VIIP |
| 430 | M | M.HpyAs006VII (98% identity) | GATC | M.HpySH007VII |
| 435 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 1400 | exodeoxyribonuclease VII large subunit | |||
| ??? | M | M.HpySORF1350P (100% identity) | TCGA | M.HpySH007VIII |
| 1410 | 204 aa hypothetical protein | |||
| 1410 | 204 aa hypothetical protein | |||
| 1415 | R | Hpy169ORF1500P (99% identity) | CCGG | HpySH007IVP |
| 1420 | M | M.Hpy20ORF1645P (100% identity) | CCGG | M.HpySH007IV |
| 1425 | AAA domain-containing protein | |||
| 1655 | polysaccharide deacetylase | |||
| 1660 | R | HpySORF1620P (100% identity) | CTNAG | HpySH007VIP |
| 1665 | M | M.Hpyfe124ORF5400P (100% identity) | CTNAG | M.HpySH007VI |
| 1670 | 118 aa hypothetical protein | |||
| 1865 | elongation factor 4 | |||
| 1870 | M | M.HpySH014ORF1855P (100% identity) | M.HpySH007ORF1870P | |
| 1875 | 133 aa hypothetical protein | |||
| 2380 | Hop family outer membrane protein HopJ/HopK | |||
| 2385 | M | M.Hpy20ORF2620P (99% identity) | ATTAAT | M.HpySH007III |
| 2390 | glycosyltransferase family 9 protein | |||
| 2395 | translational GTPase TypA | |||
| 2400 | M | M.HpyCA19II (100% identity) | ACNGT | M.HpySH007II |
| 2405 | R | HpyV003ORF3615P (99% identity) | ACNGT | HpySH007IIP |
| 2410 | DNA cytosine methyltransferase | |||
| 2405 | GIY-YIG nuclease family protein | |||
| 2410 | M | M.HpyC204ORF2455P (99% identity) | ACGT | M.HpySH007ORF2410P |
| 2415 | R | HpyOki112ORF2595P (97% identity) | ACGT | HpySH007ORF2410P |
| 2420 | catalase | |||
| 3455 | outer membrane protein | |||
| 3460 | RM | Hpy20ORF3615P (97% identity) | HpySH007ORF3460P | |
| 3465 | (Fe-S)-binding protein | |||
| 5170 | acetyl-CoA carboxylase biotin carboxylase | |||
| 5175 | M | M.HpyAs004XI (100% identity) | TCNNGA | M.HpySH007IX |
| 5180 | R | HpyK016XIIIP (98% identity) | TCNNGA | HpySH007IXP |
| 5185 | Laminin subunit alpha-2 precursor | |||
| 5360 | 144 aa hypothetical protein | |||
| ??? | M | M.Hpy417ORF5315P (97% identity) | M.HpySH007ORF5365P | |
| 5370 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 5810 | HAD family hydrolase | |||
| 5815 | M | M.HpyAs005I (98% identity) | CATG | M.HpySH007ORF5815P |
| 5820 | IceA2 protein | |||
| 6500 | DNA methyltransferase | |||
| 6505 | R | Hpy417ORF6645P (97% identity) | GANTC | HpySH007ORF6510P |
| 6510 | M | M.HpySORF7000P (100% identity) | GANTC | M.HpySH007ORF6510P |
| 6515 | N-6 DNA methylase | |||
| 6510 | site-specific DNA-methyltransferase | |||
| 6515 | RM | Hpy321ORFGP (93% identity) | HpySH007ORF6515P | |
| 6520 | carboxylating nicotinate-nucleotide | |||
| 6570 | copper response regulator transcription factor | |||
| 6575 | R | HpySH010VIP (82% identity) | HpySH007ORF6575P | |
| 6580 | restriction endonuclease | |||
| 6575 | restriction endonuclease | |||
| 6580 | R | HpySH014ORF6590P (100% identity) | HpySH007ORF6585P | |
| 6585 | M | M.HpySH014ORF6590P (99% identity) | M.HpySH007ORF6585P | |
| 6590 | site-specific DNA-methyltransferase | |||
| 6990 | DNA polymerase I | |||
| 6995 | S | S.HpyAR6ORF6960P (92% identity) | S.HpySH007ORF7000P | |
| 7000 | RM | HpySH010ORF7310P (98% identity) | HpySH007ORF7000P | |
| 7005 | ComF family protein | |||
| 7130 | YjgP/YjgQ family permease | |||
| ??? | M | M1.HpyK049IV (75% identity) | CCATC | M1.HpySH007ORF7135P |
| 7140 | M | M2.HpyPE121III (87% identity) | M2.HpySH007ORF7135P | |
| ??? | R | HpyPU007IVP (94% identity) | HpySH007ORF7135P | |
| 7150 | outer membrane protein | |||
| 7215 | transcription termination/antitermination | |||
| 7220 | RM | HpyAs009ORF7325P (71% identity) | HpySH007ORF7220P | |
| 7225 | DEAD/DEAH box helicase family protein | |||
| 7385 | 67 aa hypothetical protein | |||
| 7390 | M | M.HpySH011XI (100% identity) | TGCA | M.HpySH007X |
| 7395 | R | HpyPU001XP (99% identity) | TGCA | HpySH007XP |
| 7400 | 175 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6585 | Dam family site-specific | |||
| 6590 | M | M.HpyCA10ORF4605P (97% identity) | M.HpySH007ORF6590P | |
| 6595 | R | Hpy20ORF6995P (99% identity) | HpySH007ORF6590P | |
| 6600 | rod shape-determining protein MreC | |||
| 6650 | DNA/RNA non-specific endonuclease | |||
| 6655 | M | M.HpyJ012ORF6555P (97% identity) | M.HpySH007ORF6655P | |
| 6660 | R | HpyPF16ORF6530P (93% identity) | HpySH007ORF6655P | |
| 6665 | biotin synthase | |||
| 7220 | class I SAM-dependent DNA methyltransferase | |||
| 7225 | R | Hpy169ORF7485P (98% identity) | HpySH007ORF7230P | |
| 7230 | M | M.Hpy20ORF7645P (98% identity) | M.HpySH007ORF7230P | |
| 7235 | ATP-dependent DNA helicase RecG | |||