Helicobacter pylori SHIM-014 |
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Putative Helicobacter pylori SHIM-014 RM systems
Ref: Gutierrez-Escobar,A.J. et al. Front Microbiol 11, 601839 (2020)
REBASE ref # 31890
Complete sequence: 1,612,861 bp
GenBank #: CP051503
REBASE acronym: HpySH014
Org_num: 48235
All begin HG564_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2275 | RNA degradosome polyphosphate kinase | |||
| 2285 | S | S.HpyHK840ORFD1P (98% identity) | CCANNNNNNTC | S.HpySH014ORF2290P |
| 2290 | M | M.Hpy169ORF2385P (99% identity) | CCANNNNNNTC | M.HpySH014ORF2290P |
| ??? | R | HpyAs004ORF2240P (97% identity) | CCANNNNNNTC | HpySH014ORF2290P |
| 2305 | motility associated factor glycosyltransferase | |||
| 3865 | outer membrane beta-barrel protein HofF | |||
| 3870 | S | S.HpySH014XIII (97% identity) | CTANNNNNNNNTTG | S.HpySH014ORF3870P |
| 3875 | cadmium-translocating P-type ATPase | |||
| 4160 | N-acetylneuraminate synthase | |||
| 4165 | R | HpySH007ORF2590P (99% identity) | CTANNNNNNNTTG | HpySH014XIIIP |
| 4170 | S | S.HpySH014ORF3870P (97% identity) | CTANNNNNNNTTG | S.HpySH014XIII |
| 4175 | M | M.HpySH011XII (100% identity) | CTANNNNNNNTTG | M.HpySH014XIII |
| 4180 | DNA cytosine methyltransferase | |||
| 6805 | nickel-binding protein HpnL | |||
| 6810 | S | S.HpyB45ORFH1P (93% identity) | S.HpySH014ORF6810P | |
| 6815 | formyltetrahydrofolate deformylase | |||
| 7295 | FAD-dependent thymidylate synthase | |||
| 7300 | S | S.HpyOK308ORFFP (99% identity) | CRTANNNNNNNTC | S.HpySH014VI |
| 7305 | CAAX protease | |||
| 7310 | M | M.Hpy417ORF7480P (99% identity) | CRTANNNNNNNTC | M.HpySH014VI |
| 7315 | R | HpyAs004XIIIP (99% identity) | CRTANNNNNNNTC | HpySH014VIP |
| 7320 | M48 family metallopeptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 240 | agmatine deiminase | |||
| 245 | M | M1.HpySH010IV (99% identity) | CCTC | M1.HpySH014V |
| 250 | M | M2.Hpy20ORF220P (99% identity) | CCTC | M2.HpySH014VP |
| ??? | R | HpyAs006IVP (96% identity) | CCTC | HpySH014VP |
| 260 | site-specific DNA-methyltransferase | |||
| 255 | HNH endonuclease | |||
| 260 | M | M.Hpy20ORF240P (99% identity) | GTSAC | M.HpySH014X |
| 265 | R | Hpy20ORF240P (100% identity) | GTSAC | HpySH014XP |
| 270 | type II restriction endonuclease | |||
| 425 | ACP S-malonyltransferase | |||
| 435 | R | Hpy169ORF440P (99% identity) | GATC | HpySH014IXP |
| 440 | M | M.HpySH011VIII (99% identity) | GATC | M.HpySH014IX |
| 445 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 1395 | exodeoxyribonuclease VII large subunit | |||
| ??? | M | M.HpySORF1350P (100% identity) | TCGA | M.HpySH014XI |
| 1405 | 204 aa hypothetical protein | |||
| 1405 | 204 aa hypothetical protein | |||
| 1410 | R | HpyTW03VP (95% identity) | CCGG | HpySH014ORF1415P |
| 1415 | M | M.HpyC116VI (100% identity) | CCGG | M.HpySH014ORF1415P |
| 1420 | AAA domain-containing protein | |||
| 1650 | polysaccharide deacetylase | |||
| 1655 | R | Hpy20ORF1895P (99% identity) | CTNAG | HpySH014VIIP |
| 1660 | M | M.Hpyfe124ORF5400P (100% identity) | CTNAG | M.HpySH014VII |
| 1665 | 118 aa hypothetical protein | |||
| 1850 | elongation factor 4 | |||
| 1855 | M | M.HpySH010ORF2000P (100% identity) | M.HpySH014ORF1855P | |
| 1860 | 133 aa hypothetical protein | |||
| 2020 | Sec-independent protein translocase subunit | |||
| 2030 | M | M.Hpy20ORF2270P (100% identity) | M.HpySH014ORF2030P | |
| 2035 | Holliday junction branch migration DNA helicase | |||
| 2380 | Hop family outer membrane protein HopJ/HopK | |||
| 2385 | M | M.HpyAs004III (99% identity) | ATTAAT | M.HpySH014III |
| 2390 | glycosyltransferase family 9 protein | |||
| 2395 | translational GTPase TypA | |||
| 2400 | M | M.Hpy169ORF2485P (99% identity) | ACNGT | M.HpySH014II |
| 2405 | R | HpySORF2365P (99% identity) | ACNGT | HpySH014IIP |
| 2410 | DNA cytosine methyltransferase | |||
| 2405 | GIY-YIG nuclease family protein | |||
| 2410 | M | M.Hpy169ORF2495P (99% identity) | ACGT | M.HpySH014ORF2410P |
| 2415 | R | Hpy464ORF2310P (99% identity) | ACGT | HpySH014ORF2410P |
| 2420 | catalase | |||
| 3290 | (Fe-S)-binding protein | |||
| 3295 | RM | Hpy20ORF3615P (96% identity) | HpySH014ORF3295P | |
| 3300 | 456 aa hypothetical protein | |||
| 3375 | 3-5 exonuclease | |||
| 3380 | M | M.HpySORF3420P (100% identity) | CCNNGG | M.HpySH014IV |
| 3385 | R | Hpyfe65ORF3785P (100% identity) | CCNNGG | HpySH014IVP |
| 3390 | 3-5 exonuclease | |||
| 4175 | type I restriction-modification system subunit | |||
| 4180 | M | M.HpySORF2550P (100% identity) | M.HpySH014ORF4180P | |
| 4185 | R | HpySH011ORF2585P (100% identity) | HpySH014ORF4180P | |
| 4190 | phosphatase PAP2 family protein | |||
| 5360 | 144 aa hypothetical protein | |||
| ??? | M | M.Hpy169ORF5540P (100% identity) | M.HpySH014ORF5365P | |
| 5370 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 5805 | HAD family hydrolase | |||
| 5810 | M | M.Hpy417ORF5930P (100% identity) | CATG | M.HpySH014I |
| 5815 | R | Hpy417ORF5930P (92% identity) | CATG | HpySH014IP |
| 5820 | serine O-acetyltransferase | |||
| 6500 | DNA methyltransferase | |||
| 6505 | R | Hpy169ORF6715P (99% identity) | GANTC | HpySH014VIIIP |
| 6510 | M | M.HpySH010VIII (100% identity) | GANTC | M.HpySH014VIII |
| 6515 | DNA methyltransferase | |||
| 6510 | site-specific DNA-methyltransferase | |||
| ??? | RM | HpyAs008ORF6645P (95% identity) | HpySH014ORF6515P | |
| 6525 | carboxylating nicotinate-nucleotide | |||
| 6575 | copper response regulator transcription factor | |||
| 6580 | R | HpySH010VIP (70% identity) | HpySH014ORF6580P | |
| 6585 | restriction endonuclease | |||
| 6580 | restriction endonuclease | |||
| 6585 | R | HpySH007ORF6585P (100% identity) | HpySH014ORF6590P | |
| 6590 | M | M.HpySH011ORF6595P (100% identity) | M.HpySH014ORF6590P | |
| 6595 | site-specific DNA-methyltransferase | |||
| 7010 | DNA polymerase I | |||
| 7015 | S | S.Hpyfe107ORF265P (94% identity) | S.HpySH014ORF7020P | |
| 7020 | RM | HpyAs006ORF7125P (98% identity) | HpySH014ORF7020P | |
| 7025 | ComF family protein | |||
| 7225 | transcription termination/antitermination | |||
| 7230 | RM | HpyV005ORF7195P (91% identity) | HpySH014ORF7230P | |
| 7235 | DEAD/DEAH box helicase family protein | |||
| 7405 | 67 aa hypothetical protein | |||
| 7410 | M | M.HpyAs006XI (100% identity) | TGCA | M.HpySH014XII |
| 7415 | R | HpyAs006XIP (99% identity) | TGCA | HpySH014XIIP |
| 7420 | 173 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6590 | Dam family site-specific | |||
| ??? | M | M.Hpy169ORF6810P (99% identity) | M.HpySH014ORF6595P | |
| 6605 | R | Hpy20ORF6995P (99% identity) | HpySH014ORF6595P | |
| 6610 | rod shape-determining protein MreC | |||
| 6655 | DNA/RNA non-specific endonuclease | |||
| 6660 | M | M.HpyAs004ORF6780P (97% identity) | M.HpySH014ORF6660P | |
| 6665 | R | HpyAs010ORF6855P (95% identity) | HpySH014ORF6660P | |
| 6670 | biotin synthase | |||
| 7230 | N-6 DNA methylase | |||
| 7235 | R | HpySORF7815P (99% identity) | HpySH014ORF7240P | |
| 7240 | M | M.HpyHP32ORF6995P (95% identity) | M.HpySH014ORF7240P | |
| 7245 | ATP-dependent DNA helicase RecG | |||