Helicobacter pylori PUNO-003 |
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Putative Helicobacter pylori PUNO-003 RM systems
Ref: Gutierrez-Escobar,A.J. et al. Front Microbiol 11, 601839 (2020)
REBASE ref # 31890
Complete sequence: 1,630,535 bp
GenBank #: CP051500
REBASE acronym: HpyPU003
Org_num: 48224
All begin HG567_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2060 | RNA degradosome polyphosphate kinase | |||
| 2070 | S | S.HpyPU009ORF2080P (100% identity) | CACNNNNNTTA | S.HpyPU003ORF2075P |
| 2075 | M | M.HpyPU009ORF2080P (99% identity) | CACNNNNNTTA | M.HpyPU003ORF2075P |
| 2080 | R | HpyV003ORF3705P (86% identity) | CACNNNNNTTA | HpyPU003ORF2075P |
| 2085 | motility associated factor glycosyltransferase | |||
| 3705 | outer membrane beta-barrel protein HofF | |||
| 3710 | S | S.HpyPU009VI (99% identity) | CRTANNNNNNNTC | S.HpyPU003VI |
| 3715 | cadmium-translocating P-type ATPase | |||
| 6785 | nickel-binding protein HpnL | |||
| 6790 | S | S.HpyPU003ORF7320P (100% identity) | S.HpyPU003ORF6790P | |
| 6795 | formyltetrahydrofolate deformylase | |||
| 7310 | 303 aa hypothetical protein | |||
| 7315 | S | S.HpyPU003ORF6790P (100% identity) | S.HpyPU003ORF7320P | |
| 7320 | M | M.HpyC002XI (96% identity) | M.HpyPU003ORF7320P | |
| 7325 | R | HpyPO02XVIP (94% identity) | HpyPU003ORF7320P | |
| 7330 | M48 family metallopeptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 245 | agmatine deiminase | |||
| 250 | M | M1.HpyPU009V (100% identity) | CCTC | M1.HpyPU003V |
| 255 | M | M2.HpyPU009VP (100% identity) | CCTC | M2.HpyPU003VP |
| 260 | sodium/proline symporter PutP | |||
| 440 | 356 aa hypothetical protein | |||
| 445 | M | M.HpyPU009VIII (100% identity) | GATC | M.HpyPU003VIII |
| 450 | alpha-1,2-fucosyltransferase | |||
| 495 | HNH endonuclease | |||
| 500 | M | M.HpyPU009ORF505P (99% identity) | M.HpyPU003ORF500P | |
| 505 | bifunctional metallophosphatase/5-nucleotidase | |||
| 1225 | exodeoxyribonuclease VII large subunit | |||
| ??? | M | M.HpyPU009XI (100% identity) | TCGA | M.HpyPU003XI |
| 1235 | 86 aa hypothetical protein | |||
| 1235 | 86 aa hypothetical protein | |||
| 1240 | R | HpyPU009IVP (100% identity) | CCGG | HpyPU003IVP |
| 1245 | M | M.HpyPU009IV (100% identity) | CCGG | M.HpyPU003IV |
| 1250 | AAA domain-containing protein | |||
| 2145 | Hop family outer membrane protein HopJ/HopK | |||
| 2150 | M | M.HpyPU009II (99% identity) | ATTAAT | M.HpyPU003II |
| 2155 | glycosyltransferase family 9 protein | |||
| 2160 | translational GTPase TypA | |||
| 2165 | M | M.HpyCO9ORF2210P (97% identity) | ACGT | M.HpyPU003ORF2165P |
| 2170 | R | HpyPU009ORF2170P (100% identity) | ACGT | HpyPU003ORF2165P |
| 2175 | catalase | |||
| 2255 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 2260 | M | M.HpyPU009IX (100% identity) | GTAC | M.HpyPU003IX |
| 2265 | R | HpyPU009IXP (100% identity) | GTAC | HpyPU003IXP |
| 2270 | M23 family metallopeptidase | |||
| 2925 | (Fe-S)-binding protein | |||
| 2930 | RM | HpyI025ORF2965P (88% identity) | HpyPU003ORF2930P | |
| 2935 | 448 aa hypothetical protein | |||
| 4400 | flagellar hook protein FlgE | |||
| 4405 | R | Hpy173AORFYP (97% identity) | GTNNAC | HpyPU003XP |
| ??? | M | M.HpyCOL204X (95% identity) | GTNNAC | M.HpyPU003X |
| 4415 | ATP-dependent helicase | |||
| 5095 | methyltransferase | |||
| 5100 | M | M.HpyPU009XII (100% identity) | TCNNGA | M.HpyPU003XII |
| 5105 | R | HpyPU009XIIP (100% identity) | TCNNGA | HpyPU003XIIP |
| 5110 | Laminin subunit alpha-2 precursor | |||
| 5290 | 144 aa hypothetical protein | |||
| 5295 | R | Hpyoh1ORF495P (99% identity) | GCGC | HpyPU003ORF5300P |
| ??? | M | M.HpyPU009ORF5295P (100% identity) | GCGC | M.HpyPU003ORF5300P |
| 5305 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 5750 | HAD family hydrolase | |||
| 5755 | M | M.HpyPU009I (99% identity) | CATG | M.HpyPU003I |
| 5760 | IceA2 protein | |||
| 6480 | S41 family peptidase | |||
| ??? | R | HpyPU009ORF6490P (99% identity) | GANTC | HpyPU003ORF6495P |
| 6495 | M | M.HpyPU009ORF6490P (100% identity) | GANTC | M.HpyPU003ORF6495P |
| 6500 | DNA methyltransferase | |||
| 6495 | site-specific DNA-methyltransferase | |||
| ??? | RM | HpyPU009ORF6495P (99% identity) | HpyPU003ORF6500P | |
| 6510 | carboxylating nicotinate-nucleotide | |||
| 6560 | copper response regulator transcription factor | |||
| 6565 | R | HpyPU009VIIP (100% identity) | GAAGA | HpyPU003VIIP |
| 6570 | M | M1.HpyPU009VII (100% identity) | GAAGA | M1.HpyPU003VII |
| 6575 | M | M2.Hpy20105ORF1905P (99% identity) | GAAGA | M2.HpyPU003VII |
| 6580 | site-specific DNA-methyltransferase | |||
| 6980 | DEAD/DEAH box helicase family protein | |||
| 6985 | RM | Hpy1601ORF5950P (89% identity) | HpyPU003ORF6985P | |
| 6990 | 176 aa hypothetical protein | |||
| 7070 | outer membrane protein | |||
| 7075 | R | HpyPU009IIIP (100% identity) | CCATC | HpyPU003IIIP |
| 7080 | M | M1.HpyPU009III (100% identity) | CCATC | M1.HpyPU003III |
| ??? | M | M2.HpyPU009III (100% identity) | CCATC | M2.HpyPU003III |
| 7090 | YjgP/YjgQ family permease | |||
| 7215 | ComF family protein | |||
| 7220 | RM | HpyPU009ORF7215P (99% identity) | HpyPU003ORF7220P | |
| 7225 | S | S.HpySP19ORF7470P (96% identity) | S.HpyPU003ORF7220P | |
| 7230 | DNA polymerase I | |||
| 7405 | 67 aa hypothetical protein | |||
| 7410 | M | M.HpyPU009XIII (100% identity) | TGCA | M.HpyPU003XIII |
| 7415 | R | HpyPU009XIIIP (100% identity) | TGCA | HpyPU003XIIIP |
| 7420 | elongation factor Ts | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6575 | site-specific DNA-methyltransferase | |||
| 6580 | M | M.HpyPU004ORF6525P (93% identity) | M.HpyPU003ORF6580P | |
| 6585 | R | HpyPU009ORF6570P (99% identity) | HpyPU003ORF6580P | |
| 6590 | rod shape-determining protein MreC | |||
| 6635 | DNA/RNA non-specific endonuclease | |||
| 6640 | M | M.HpyPU009ORF6630P (98% identity) | M.HpyPU003ORF6640P | |
| 6645 | R | HpyPU009ORF6630P (95% identity) | HpyPU003ORF6640P | |
| 6650 | biotin synthase | |||
| 6970 | ATP-dependent DNA helicase RecG | |||
| 6975 | M | M.HpyU306ORF7085P (96% identity) | M.HpyPU003ORF6975P | |
| 6980 | R | HpyPU009ORF6970P (99% identity) | HpyPU003ORF6975P | |
| 6985 | class I SAM-dependent DNA methyltransferase | |||