Helicobacter pylori PUNO-004 |
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Putative Helicobacter pylori PUNO-004 RM systems
Ref: Gutierrez-Escobar,A.J. et al. Front Microbiol 11, 601839 (2020)
REBASE ref # 31890
Complete sequence: 1,614,092 bp
GenBank #: CP051499
REBASE acronym: HpyPU004
Org_num: 48225
All begin HG568_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2155 | RNA degradosome polyphosphate kinase | |||
| 2165 | S | S.HpyU002VI (98% identity) | CTANNNNNNTC | S.HpyPU004ORF2170P |
| 2170 | M | M.HpyNCI2aORFMP (95% identity) | CTANNNNNNTC | M.HpyPU004ORF2170P |
| ??? | R | HpySWT04ORF2190P (88% identity) | CTANNNNNNTC | HpyPU004ORF2170P |
| 2185 | motility associated factor glycosyltransferase | |||
| 2435 | phosphatase PAP2 family protein | |||
| 2440 | M | M.HpyPU008XV (96% identity) | ACANNNNNNRTC | M.HpyPU004XV |
| 2445 | S | S.Hpy120ORF3900P (68% identity) | ACANNNNNNRTC | S.HpyPU004XV |
| 2450 | R | HpyPU002ORF4030P (97% identity) | ACANNNNNNRTC | HpyPU004XVP |
| 2455 | hydroxyethylthiazole kinase | |||
| 2725 | cadmium-translocating P-type ATPase | |||
| 2730 | S | S.HpyMA16XVI (67% identity) | TAAANNNNNNNTGG | S.HpyPU004XIV |
| 2735 | outer membrane beta-barrel protein HofF | |||
| 6750 | nickel-binding protein HpnL | |||
| 6755 | S | S.HpyNCI32ORFJP (97% identity) | CRTANNNNNNNTG | S.HpyPU004ORF6755P |
| 6760 | formyltetrahydrofolate deformylase | |||
| 7255 | 59 aa hypothetical protein | |||
| 7260 | S | S.HpyC124ORF7525P (96% identity) | S.HpyPU004ORF7270P | |
| 7265 | CAAX protease | |||
| 7270 | M | M.HpyPU008ORF7520P (97% identity) | M.HpyPU004ORF7270P | |
| 7275 | R | HpyLIM7ORFYP (94% identity) | HpyPU004ORF7270P | |
| 7280 | M48 family metallopeptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 245 | agmatine deiminase | |||
| 250 | M | M1.Hpy1681ORFGP (99% identity) | CCTC | M1.HpyPU004VI |
| 255 | M | M2.HpyCA16IVP (99% identity) | CCTC | M2.HpyPU004VIP |
| 260 | R | HpySH007VP (96% identity) | CCTC | HpyPU004VIP |
| 265 | site-specific DNA-methyltransferase | |||
| 260 | HNH endonuclease | |||
| 265 | M | M.HpyAs006IX (99% identity) | GTSAC | M.HpyPU004XI |
| 270 | R | HpyJ012XP (98% identity) | GTSAC | HpyPU004XIP |
| 275 | sodium/proline symporter PutP | |||
| 460 | ACP S-malonyltransferase | |||
| 470 | R | HpyCA15VIIIP (97% identity) | GATC | HpyPU004IXP |
| 475 | M | M.HpyPE107VII (98% identity) | GATC | M.HpyPU004IX |
| 480 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 560 | 256 aa hypothetical protein | |||
| 565 | M | M.HpyPE11XIII (97% identity) | M.HpyPU004ORF565P | |
| 570 | NYN domain-containing protein | |||
| 885 | elongation factor P | |||
| 890 | M | M.HpyPU001ORF870P (99% identity) | M.HpyPU004ORF890P | |
| 895 | 256 aa hypothetical protein | |||
| 1300 | exodeoxyribonuclease VII large subunit | |||
| ??? | R | HpyCHN8IVP (97% identity) | CCGG | HpyPU004VP |
| 1310 | M | M.HpyPU007V (100% identity) | CCGG | M.HpyPU004V |
| 1315 | AAA domain-containing protein | |||
| 1740 | elongation factor 4 | |||
| 1745 | M | M.HpySW02XV (100% identity) | M.HpyPU004ORF1745P | |
| 1750 | 133 aa hypothetical protein | |||
| 2245 | Hop family outer membrane protein HopJ/HopK | |||
| 2250 | M | M.HpyPE111II (97% identity) | ATTAAT | M.HpyPU004III |
| 2255 | glycosyltransferase family 9 protein | |||
| 2260 | translational GTPase TypA | |||
| 2265 | M | M.HpyPU001II (99% identity) | ACNGT | M.HpyPU004II |
| 2270 | R | Hpyfe39ORF4885P (99% identity) | ACNGT | HpyPU004IIP |
| 2275 | DNA cytosine methyltransferase | |||
| 2270 | GIY-YIG nuclease family protein | |||
| 2275 | M | M.HpyPU007ORF2230P (98% identity) | ACGT | M.HpyPU004ORF2275P |
| ??? | R | HpyK154ORF3315P (96% identity) | ACGT | HpyPU004ORF2275P |
| 2285 | catalase | |||
| 3275 | outer membrane protein | |||
| 3280 | RM | HpyC006ORF3115P (88% identity) | HpyPU004ORF3280P | |
| 3285 | (Fe-S)-binding protein | |||
| 4265 | flagellar hook protein FlgE | |||
| ??? | M | M.HpyK016XI (97% identity) | GTNNAC | M.HpyPU004X |
| 4275 | ATP-dependent helicase | |||
| 5075 | acetyl-CoA carboxylase biotin carboxylase | |||
| 5080 | M | M.Hpy120ORF5255P (99% identity) | TCNNGA | M.HpyPU004XII |
| ??? | R | Hpyfe113ORF930P (98% identity) | TCNNGA | HpyPU004XIIP |
| 5090 | Laminin subunit alpha-2 precursor | |||
| 5260 | 144 aa hypothetical protein | |||
| ??? | M | M.HpyPE121XII (97% identity) | GCGC | M.HpyPU004ORF5265P |
| 5270 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 5715 | HAD family hydrolase | |||
| 5720 | M | M.HpyPU008I (98% identity) | CATG | M.HpyPU004I |
| ??? | R | Hpy135ORF6200P (74% identity) | CATG | HpyPU004IP |
| 5730 | serine O-acetyltransferase | |||
| 6425 | DNA methyltransferase | |||
| 6430 | R | HpyAs005IXP (95% identity) | GANTC | HpyPU004VIIIP |
| 6435 | M | M.HpyNP02VII (99% identity) | GANTC | M.HpyPU004VIII |
| 6440 | 358 aa hypothetical protein | |||
| 6440 | 358 aa hypothetical protein | |||
| 6445 | RM | Hpy120ORF6660P (70% identity) | HpyPU004ORF6445P | |
| 6450 | carboxylating nicotinate-nucleotide | |||
| 6500 | copper response regulator transcription factor | |||
| 6505 | R | HpyNCI2aIIP (93% identity) | GAAGA | HpyPU004VIIP |
| 6510 | M | M2.HpySP301V (98% identity) | GAAGA | M1.HpyPU004VII |
| 6515 | M | M1.HpySG32VII (99% identity) | GAAGA | M2.HpyPU004VII |
| 6520 | 52 aa hypothetical protein | |||
| 6610 | type II toxin-antitoxin system YafQ family | |||
| 6615 | R | HpyPE11XIIP (99% identity) | CCTTC | HpyPU004ORF6620P |
| 6620 | M | M.HpyPE19XII (98% identity) | CCTTC | M.HpyPU004ORF6620P |
| 6625 | biotin synthase | |||
| 6955 | DNA polymerase I | |||
| 6960 | S | S.Hpy20ORF7420P (66% identity) | S.HpyPU004ORF6965P | |
| 6965 | RM | Hpy155ORF570P (97% identity) | HpyPU004ORF6965P | |
| 6970 | ComF family protein | |||
| 7095 | YjgP/YjgQ family permease | |||
| ??? | M | M2.Hpyfe88ORF155P (77% identity) | CCATC | M1.HpyPU004IV |
| 7105 | M | M2.HpyPU002IV (100% identity) | CCATC | M2.HpyPU004IV |
| 7110 | R | HpyPU006IVP (98% identity) | CCATC | HpyPU004IVP |
| 7115 | outer membrane protein | |||
| 7180 | transcription termination/antitermination | |||
| 7185 | RM | HpyPE138XII (91% identity) | HpyPU004ORF7185P | |
| 7190 | DEAD/DEAH box helicase family protein | |||
| 7355 | 67 aa hypothetical protein | |||
| 7360 | M | M.HpyBG4IX (97% identity) | TGCA | M.HpyPU004XIII |
| 7365 | R | HpyBR4ORF7365P (95% identity) | TGCA | HpyPU004XIIIP |
| 7370 | 104 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6520 | 52 aa hypothetical protein | |||
| 6525 | M | M.HpyPU003ORF6580P (93% identity) | M.HpyPU004ORF6525P | |
| 6530 | R | HpyC105ORF4570P (95% identity) | HpyPU004ORF6525P | |
| 6535 | rod shape-determining protein MreC | |||
| 6585 | DNA/RNA non-specific endonuclease | |||
| 6590 | M | M.Hpy120ORF6815P (97% identity) | M.HpyPU004ORF6590P | |
| 6595 | R | HpySP706ORF6460P (92% identity) | HpyPU004ORF6590P | |
| 6600 | replication initiation protein | |||
| 7185 | class I SAM-dependent DNA methyltransferase | |||
| 7190 | R | HpyPE105ORF6880P (95% identity) | HpyPU004ORF7195P | |
| 7195 | M | M.HpyTW05ORF7200P (94% identity) | M.HpyPU004ORF7195P | |
| 7200 | ATP-dependent DNA helicase RecG | |||