Helicobacter pylori PUNO-007 |
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Putative Helicobacter pylori PUNO-007 RM systems
Ref: Gutierrez-Escobar,A.J. et al. Front Microbiol 11, 601839 (2020)
REBASE ref # 31890
Complete sequence: 1,628,378 bp
GenBank #: CP051497
REBASE acronym: HpyPU007
Org_num: 48227
All begin HG570_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2115 | RNA degradosome polyphosphate kinase | |||
| ??? | S | S.HpyPO02ORF4325P (97% identity) | CACNNNNNTC | S.HpyPU007XVII |
| 2130 | M | M.HpyPU001ORF4775P (96% identity) | CACNNNNNTC | M.HpyPU007XVII |
| 2135 | R | HpyJSHR3ORF6130P (92% identity) | CACNNNNNTC | HpyPU007XVIIP |
| 2140 | motility associated factor glycosyltransferase | |||
| 3690 | outer membrane beta-barrel protein HofF | |||
| 3695 | S | S.HpyKG4XIX (94% identity) | AAGNNNNNNTAG | S.HpyPU007XVI |
| 3700 | cadmium-translocating P-type ATPase | |||
| 3970 | hydroxyethylthiazole kinase | |||
| 3975 | R | HpyCA20VP (95% identity) | AAGNNNNNCTT | HpyPU007XVP |
| 3980 | S | S.HpyJO10ORF1805P (94% identity) | AAGNNNNNCTT | S.HpyPU007XV |
| 3985 | M | M.HpyPU001ORF2955P (96% identity) | AAGNNNNNCTT | M.HpyPU007XV |
| 3990 | phosphatase PAP2 family protein | |||
| 6785 | nickel-binding protein HpnL | |||
| 6790 | S | S.Hpy117ORF6850P (71% identity) | GANNNNNNNTRRG | S.HpyPU007XVIII |
| 6795 | formyltetrahydrofolate deformylase | |||
| 7285 | cag pathogenicity island protein | |||
| 7290 | S | S.Hpyfe21ORF410P (65% identity) | CAANNNNNNNTAYC | S.HpyPU007XIV |
| 7295 | CAAX protease | |||
| 7300 | M | M.HpyPU008ORF7520P (98% identity) | CAANNNNNNNTAYC | M.HpyPU007XIV |
| 7305 | R | HpySH007ORF7295P (97% identity) | CAANNNNNNNTAYC | HpyPU007XIVP |
| 7310 | M48 family metallopeptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 240 | AguA family protein | |||
| 245 | M | M.HpyP98ORFCP (98% identity) | CCTC | M1.HpyPU007VI |
| 250 | M | M2.HpyCA7IVP (99% identity) | CCTC | M2.HpyPU007VIP |
| 255 | R | HpyPU001IVP (99% identity) | CCTC | HpyPU007VIP |
| 260 | sodium/proline symporter PutP | |||
| 445 | 337 aa hypothetical protein | |||
| 450 | M | M.HpyC113VI (97% identity) | GATC | M.HpyPU007IX |
| 455 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 1245 | exodeoxyribonuclease VII large subunit | |||
| ??? | M | M.Hpy135ORF1345P (99% identity) | TCGA | M.HpyPU007XII |
| 1255 | 204 aa hypothetical protein | |||
| 1255 | 204 aa hypothetical protein | |||
| 1260 | R | HpyPE11IIP (98% identity) | CCGG | HpyPU007VP |
| 1265 | M | M.HpyPU004V (100% identity) | CCGG | M.HpyPU007V |
| 1270 | AAA domain-containing protein | |||
| 1500 | polysaccharide deacetylase | |||
| 1505 | R | Hpy120ORF1585P (98% identity) | CTNAG | HpyPU007VIIP |
| 1510 | M | M.HpyPU006VI (99% identity) | CTNAG | M.HpyPU007VII |
| 1515 | 119 aa hypothetical protein | |||
| 2200 | Hop family outer membrane protein HopJ/HopK | |||
| 2205 | M | M.HpyJ029IX (98% identity) | ATTAAT | M.HpyPU007III |
| 2210 | glycosyltransferase family 9 protein | |||
| 2215 | translational GTPase TypA | |||
| 2220 | M | M.Hpy135ORF2355P (99% identity) | ACNGT | M.HpyPU007II |
| 2225 | R | HpyPE121ORF2240P (99% identity) | ACNGT | HpyPU007IIP |
| 2230 | DNA cytosine methyltransferase | |||
| 2225 | GIY-YIG nuclease family protein | |||
| 2230 | M | M.HpySH007ORF2410P (99% identity) | ACGT | M.HpyPU007ORF2230P |
| 2235 | R | HpyUM065ORF7975P (99% identity) | ACGT | HpyPU007ORF2230P |
| 2240 | catalase | |||
| 2325 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 2330 | M | M.HpyME28II (99% identity) | GTAC | M.HpyPU007X |
| 2335 | R | HpyAL02ORFNP (71% identity) | GTAC | HpyPU007XP |
| 2340 | M23 family metallopeptidase | |||
| 3125 | (Fe-S)-binding protein | |||
| 3130 | RM | Hpyfe83ORF3805P (86% identity) | HpyPU007ORF3130P | |
| 3135 | 450 aa hypothetical protein | |||
| 3395 | 101 aa hypothetical protein | |||
| 3400 | R | HpyPE11ORF3015P (99% identity) | HpyPU007ORF3405P | |
| 3405 | M | M1.HpyCOL210ORF3530P (99% identity) | M1.HpyPU007ORF3405P | |
| 3410 | M | M1.HpySP706ORF3020P (80% identity) | M2.HpyPU007ORF3405P | |
| 3415 | 30S ribosomal protein S12 methylthiotransferase | |||
| 4240 | flagellar hook protein FlgE | |||
| ??? | M | M.HpyPU008XI (99% identity) | GTNNAC | M.HpyPU007XI |
| 4250 | ATP-dependent helicase | |||
| 4960 | acetyl-CoA carboxylase biotin carboxylase | |||
| 4965 | M | M.HpyGCT55ORFEP (99% identity) | TCNNGA | M.HpyPU007XIII |
| 4970 | R | HpySP210IXP (99% identity) | TCNNGA | HpyPU007XIIIP |
| 4975 | Laminin subunit alpha-2 precursor | |||
| 5145 | 144 aa hypothetical protein | |||
| ??? | M | M.HpyLIM2ORF5505P (98% identity) | GCGC | M.HpyPU007ORF5150P |
| 5155 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 5750 | HAD family hydrolase | |||
| 5755 | M | M.HpyC004I (98% identity) | CATG | M.HpyPU007I |
| 5760 | IceA2 protein | |||
| 6455 | 92 aa hypothetical protein | |||
| 6460 | R | HpyAs005IXP (97% identity) | GANTC | HpyPU007VIIIP |
| 6465 | M | M.HpyAR9IV (99% identity) | GANTC | M.HpyPU007VIII |
| 6470 | N-6 DNA methylase | |||
| 6465 | site-specific DNA-methyltransferase | |||
| 6470 | RM | Hpy169ORF6730P (90% identity) | HpyPU007ORF6470P | |
| 6475 | carboxylating nicotinate-nucleotide | |||
| 6530 | site-specific DNA-methyltransferase | |||
| 6535 | R | HpyPU001ORF6685P (99% identity) | HpyPU007ORF6540P | |
| 6540 | M | M.HpyPU001ORF6685P (99% identity) | M.HpyPU007ORF6540P | |
| 6545 | site-specific DNA-methyltransferase | |||
| 6630 | type II toxin-antitoxin system YafQ family | |||
| 6635 | R | HpyPE11XIIP (68% identity) | CCTTC | HpyPU007ORF6645P |
| 6640 | 97 aa hypothetical protein | |||
| 6645 | M | M.HpyPU004ORF6620P (99% identity) | CCTTC | M.HpyPU007ORF6645P |
| 6650 | biotin synthase | |||
| 6710 | glycosyltransferase family 8 protein | |||
| 6715 | R | HpyF234ORFSP (98% identity) | HpyPU007ORF6715P | |
| 6720 | DNA (cytosine-5-)-methyltransferase | |||
| 6715 | ThaI family type II restriction endonuclease | |||
| 6720 | M | M.HpyAs009ORF6800P (99% identity) | M.HpyPU007ORF6720P | |
| 6725 | UDP-N-acetylmuramate dehydrogenase | |||
| 6985 | DNA polymerase I | |||
| 6990 | S | S1.Hpy340ORF1225P (63% identity) | CYANNNNNNTGY | S.HpyPU007XIX |
| 6995 | RM | HpyBR17ORF7060P (98% identity) | CYANNNNNNTGY | HpyPU007XIX |
| 7000 | ComF family protein | |||
| 7125 | YjgP/YjgQ family permease | |||
| ??? | M | M1.HpyPE138III (77% identity) | CCATC | M1.HpyPU007IV |
| 7135 | M | M2.Hpy120ORF7345P (99% identity) | CCATC | M2.HpyPU007IV |
| 7140 | R | Hpyfe75ORF215P (98% identity) | CCATC | HpyPU007IVP |
| 7145 | outer membrane protein | |||
| 7210 | transcription termination/antitermination | |||
| 7215 | RM | HpyPE138XII (66% identity) | HpyPU007ORF7215P | |
| 7220 | DEAD/DEAH box helicase family protein | |||
| 7390 | type II methylase | |||
| 7395 | R | HpyPE121XIP (83% identity) | HpyPU007ORF7395P | |
| 7400 | 166 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6525 | copper response regulator transcription factor | |||
| 6530 | M | M.HpyPU001ORF6675P (98% identity) | M.HpyPU007ORF6545P | |
| 6535 | restriction endonuclease | |||
| 6540 | Dam family site-specific | |||
| 6545 | site-specific DNA-methyltransferase | |||
| 6550 | R | Hpy20ORF6995P (98% identity) | HpyPU007ORF6545P | |
| 6555 | rod shape-determining protein MreC | |||
| 6605 | DNA/RNA non-specific endonuclease | |||
| 6610 | M | M.HpyOK36ORFLP (96% identity) | M.HpyPU007ORF6610P | |
| 6615 | R | HpySP706ORF6460P (92% identity) | HpyPU007ORF6610P | |
| 6620 | replication initiation protein | |||
| 7215 | class I SAM-dependent DNA methyltransferase | |||
| 7220 | R | HpySH011ORF7260P (98% identity) | HpyPU007ORF7225P | |
| 7225 | M | M.HpyNCI32ORFGP (97% identity) | M.HpyPU007ORF7225P | |
| 7230 | ATP-dependent DNA helicase RecG | |||