Helicobacter pylori PUNO-008 |
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Putative Helicobacter pylori PUNO-008 RM systems
Ref: Gutierrez-Escobar,A.J. et al. Front Microbiol 11, 601839 (2020)
REBASE ref # 31890
Complete sequence: 1,653,624 bp
GenBank #: CP051496
REBASE acronym: HpyPU008
Org_num: 48228
All begin HG571_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2135 | RNA degradosome polyphosphate kinase | |||
| 2145 | S | S.HpyJ017ORF2250P (96% identity) | S.HpyPU008ORF2150P | |
| 2150 | M | M.HpyPU002III (97% identity) | M.HpyPU008ORF2150P | |
| ??? | R | Hpy120ORF2240P (96% identity) | HpyPU008ORF2150P | |
| 2165 | motility associated factor glycosyltransferase | |||
| 3850 | outer membrane beta-barrel protein HofF | |||
| 3855 | S | S.Hpy274ORF657P (65% identity) | S.HpyPU008ORF3855P | |
| 3860 | cadmium-translocating P-type ATPase | |||
| 4130 | hydroxyethylthiazole kinase | |||
| 4135 | R | HpyPU002ORF4030P (94% identity) | GAYNNNNNRTAY | HpyPU008XVP |
| 4140 | S | S.Hpya34ORFAP (96% identity) | GAYNNNNNRTAY | S.HpyPU008XV |
| 4145 | M | M.HpyPU010VII (96% identity) | GAYNNNNNRTAY | M.HpyPU008XV |
| 4150 | phosphatase PAP2 family protein | |||
| 6995 | nickel-binding protein HpnL | |||
| 7000 | S | S.Hpy1766ORFCP (96% identity) | S.HpyPU008ORF7000P | |
| 7005 | formyltetrahydrofolate deformylase | |||
| 7505 | FAD-dependent thymidylate synthase | |||
| 7510 | S | S.Hpy135ORF7745P (97% identity) | CRAANNNNNNTTTA | S.HpyPU008ORF7520P |
| 7515 | CAAX protease | |||
| 7520 | M | M.HpyPE111ORF7360P (98% identity) | CRAANNNNNNTTTA | M.HpyPU008ORF7520P |
| 7525 | R | HpyAs002ORF7555P (96% identity) | CRAANNNNNNTTTA | HpyPU008ORF7520P |
| 7530 | M48 family metallopeptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 245 | agmatine deiminase | |||
| 250 | M | M1.HpyOK310ORFLP (98% identity) | CCTC | M1.HpyPU008VI |
| 255 | M | M2.Hpy117ORF220P (99% identity) | CCTC | M2.HpyPU008VIP |
| 260 | R | HpySH007VP (96% identity) | CCTC | HpyPU008VIP |
| 265 | sodium/proline symporter PutP | |||
| 445 | 340 aa hypothetical protein | |||
| 450 | M | M.HpyU434VII (95% identity) | GATC | M.HpyPU008X |
| 455 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 1250 | exodeoxyribonuclease VII large subunit | |||
| ??? | M | M.HpyPU007XII (98% identity) | TCGA | M.HpyPU008XII |
| 1260 | 204 aa hypothetical protein | |||
| 1260 | 204 aa hypothetical protein | |||
| ??? | R | Hpy1768ORFAP (96% identity) | CCGG | HpyPU008IVP |
| 1275 | M | M.HpyL026IV (99% identity) | CCGG | M.HpyPU008IV |
| 1280 | AAA domain-containing protein | |||
| 1510 | polysaccharide deacetylase | |||
| 1515 | R | Hpy135ORF1605P (98% identity) | CTNAG | HpyPU008VIIP |
| 1520 | M | M.Hpyfe124ORF5400P (100% identity) | CTNAG | M.HpyPU008VII |
| 1525 | 118 aa hypothetical protein | |||
| 2225 | Hop family outer membrane protein HopJ/HopK | |||
| 2230 | M | M.HpyPE138II (98% identity) | ATTAAT | M.HpyPU008II |
| 2235 | glycosyltransferase family 9 protein | |||
| 2370 | integrase | |||
| 2375 | M | M.HpySP706II (56% identity) | M.HpyPU008ORF2375P | |
| 2380 | R | HpyGM9ORF2240P (92% identity) | ACNGT | HpyPU008ORF2375P |
| 2385 | DNA cytosine methyltransferase | |||
| 2380 | GIY-YIG nuclease family protein | |||
| 2385 | M | M.HpyCA1ORF4680P (98% identity) | ACGT | M.HpyPU008ORF2385P |
| 2390 | type II restriction endonuclease | |||
| 3285 | 63 aa hypothetical protein | |||
| 3290 | RM | HpyLIM7ORFUP (69% identity) | HpyPU008ORF3290P | |
| 3295 | outer membrane protein | |||
| 3375 | 3-5 exonuclease | |||
| 3380 | M | M.HpyP109IV (99% identity) | CCNNGG | M.HpyPU008V |
| 3385 | R | HpyPE14IVP (100% identity) | CCNNGG | HpyPU008VP |
| 3390 | 3-5 exonuclease | |||
| 4410 | flagellar hook protein FlgE | |||
| ??? | M | M.HpyAs004IX (100% identity) | GTNNAC | M.HpyPU008XI |
| 4420 | ATP-dependent helicase | |||
| 5340 | acetyl-CoA carboxylase biotin carboxylase | |||
| 5345 | M | M.HpyP98ORFEP (99% identity) | TCNNGA | M.HpyPU008XIII |
| 5350 | R | Hpyfe93ORF2050P (99% identity) | TCNNGA | HpyPU008XIIIP |
| 5355 | Laminin subunit alpha-2 precursor | |||
| 5535 | 144 aa hypothetical protein | |||
| ??? | M | M.HpySP706XIV (96% identity) | M.HpyPU008ORF5540P | |
| 5545 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 5990 | HAD family hydrolase | |||
| 5995 | M | M.HpySH014I (98% identity) | CATG | M.HpyPU008I |
| ??? | R | HpyC006IP (74% identity) | CATG | HpyPU008IP |
| 6005 | serine O-acetyltransferase | |||
| 6685 | DNA methyltransferase | |||
| 6690 | R | Hpy464ORF6555P (97% identity) | GANTC | HpyPU008IXP |
| 6695 | M | M.HpyAs009X (99% identity) | GANTC | M.HpyPU008IX |
| 6700 | DNA methyltransferase | |||
| 6695 | site-specific DNA-methyltransferase | |||
| ??? | RM | HpyPU010ORF6770P (91% identity) | HpyPU008ORF6700P | |
| 6710 | carboxylating nicotinate-nucleotide | |||
| 6760 | copper response regulator transcription factor | |||
| 6765 | R | HpyI015VIIIP (98% identity) | GAAGA | HpyPU008VIIIP |
| 6770 | M | M1.HpyU204VIII (98% identity) | GAAGA | M1.HpyPU008VIII |
| 6775 | M | M.HpyV006VII (100% identity) | GAAGA | M2.HpyPU008VIII |
| 6780 | site-specific DNA-methyltransferase | |||
| 6780 | site-specific DNA-methyltransferase | |||
| 6785 | R | HpySH011ORF6595P (100% identity) | HpyPU008ORF6790P | |
| 6790 | M | M.HpyCOL210ORF6675P (98% identity) | M.HpyPU008ORF6790P | |
| 6795 | site-specific DNA-methyltransferase | |||
| 7200 | DNA polymerase I | |||
| 7205 | S | S.HpyC102ORF7150P (53% identity) | S2.HpyPU008ORF7215P | |
| 7210 | S | S.HpyL022ORF7395P (49% identity) | S1.HpyPU008ORF7215P | |
| 7215 | RM | HpyGE4ORF7075P (95% identity) | HpyPU008ORF7215P | |
| 7220 | ComF family protein | |||
| 7345 | YjgP/YjgQ family permease | |||
| ??? | M | M2.Hpyfe88ORF155P (77% identity) | CCATC | M1.HpyPU008III |
| 7355 | M | M2.HpyPU006IV (99% identity) | CCATC | M2.HpyPU008III |
| ??? | R | HpyPU004IVP (97% identity) | CCATC | HpyPU008IIIP |
| 7365 | outer membrane protein | |||
| 7430 | transcription termination/antitermination | |||
| 7435 | RM | HpyPU004ORF7185P (89% identity) | HpyPU008ORF7435P | |
| 7440 | DEAD/DEAH box helicase family protein | |||
| 7610 | 67 aa hypothetical protein | |||
| 7615 | M | M.HpyUM037VIII (98% identity) | TGCA | M.HpyPU008XIV |
| 7620 | R | Hpy479CORFKP (99% identity) | TGCA | HpyPU008XIVP |
| 7625 | 177 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6775 | site-specific DNA-methyltransferase | |||
| 6780 | M | M2.HpyPU008ORF6780P (100% identity) | M1.HpyPU008ORF6780P | |
| 6785 | restriction endonuclease | |||
| 6790 | Dam family site-specific | |||
| 6795 | M | M1.HpyPU008ORF6780P (100% identity) | M2.HpyPU008ORF6780P | |
| 6800 | R | HpyLIM7ORFXP (95% identity) | HpyPU008ORF6780P | |
| 6805 | rod shape-determining protein MreC | |||
| 6855 | DNA/RNA non-specific endonuclease | |||
| 6860 | M | M.Hpy13094ORF1371P (95% identity) | M.HpyPU008ORF6860P | |
| 6865 | R | HpyPU001ORF6750P (97% identity) | HpyPU008ORF6860P | |
| 6870 | biotin synthase | |||
| 7435 | class I SAM-dependent DNA methyltransferase | |||
| 7440 | R | HpyPU002ORF7075P (97% identity) | HpyPU008ORF7445P | |
| ??? | M | M.HpyU206ORF7055P (98% identity) | M.HpyPU008ORF7445P | |
| 7455 | ATP-dependent DNA helicase RecG | |||