Helicobacter pylori LIM-001 |
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Putative Helicobacter pylori LIM-001 RM systems
Ref: Gutierrez-Escobar,A.J. et al. Front Microbiol 11, 601839 (2020)
REBASE ref # 31890
Complete sequence: 1,638,284 bp
GenBank #: CP051541
REBASE acronym: HpyLIM1
Org_num: 48204
All begin HG574_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2145 | RNA degradosome polyphosphate kinase | |||
| 2155 | S | S.HpyPE14ORF2175P (100% identity) | S.HpyLIM1ORF2160P | |
| 2160 | M | M.HpyPE14ORF2175P (100% identity) | M.HpyLIM1ORF2160P | |
| 2165 | R | HpyPE15ORF2175P (100% identity) | HpyLIM1ORF2160P | |
| 2170 | relaxase/mobilization nuclease domain-containing | |||
| 2290 | integrase | |||
| 2295 | R | HpyPE14ORF2310P (100% identity) | HpyLIM1ORF2295P | |
| 2300 | motility associated factor glycosyltransferase | |||
| 3945 | outer membrane beta-barrel protein HofF | |||
| 3950 | S | S.HpyPE14ORF3955P (100% identity) | S.HpyLIM1ORF3950P | |
| 3955 | cadmium-translocating P-type ATPase | |||
| 4230 | hydroxyethylthiazole kinase | |||
| 4235 | R | HpyPE14XP (100% identity) | ACANNNNNNNCTT | HpyLIM1IIP |
| 4240 | S | S.HpyPE14X (100% identity) | ACANNNNNNNCTT | S.HpyLIM1II |
| 4245 | M | M.HpyPE14X (100% identity) | ACANNNNNNNCTT | M.HpyLIM1II |
| 4250 | phosphatase PAP2 family protein | |||
| 7360 | FAD-dependent thymidylate synthase | |||
| 7365 | S | S1.HpyPE14XII (100% identity) | CRAANNNNNNRTAA | S.HpyLIM1XIII |
| 7370 | M | M.HpyPE14XII (100% identity) | CRAANNNNNNRTAA | M.HpyLIM1XIII |
| 7375 | R | HpyPE14XIIP (100% identity) | CRAANNNNNNRTAA | HpyLIM1XIIIP |
| 7380 | M48 family metallopeptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 270 | agmatine deiminase | |||
| 275 | M | M1.HpyPE14ORF275P (100% identity) | CCTC | M1.HpyLIM1ORF275P |
| 280 | M | M2.HpyPE15ORF275P (100% identity) | M2.HpyLIM1ORF275P | |
| 285 | 61 aa hypothetical protein | |||
| 285 | 61 aa hypothetical protein | |||
| 290 | R | HpyPE14VIP (100% identity) | CCTTC | HpyLIM1VIP |
| 295 | M | M.HpyPE14VI (100% identity) | CCTTC | M.HpyLIM1VI |
| 300 | sodium/proline symporter PutP | |||
| 485 | 329 aa hypothetical protein | |||
| 490 | M | M.HpyPE14XIII (100% identity) | GATC | M.HpyLIM1I |
| 495 | alpha-1,2-fucosyltransferase | |||
| 1275 | exodeoxyribonuclease VII large subunit | |||
| ??? | M | M.HpyLIM6XIII (98% identity) | TCGA | M.HpyLIM1XII |
| 1285 | 204 aa hypothetical protein | |||
| 1285 | 204 aa hypothetical protein | |||
| 1290 | R | HpyPE14ORF1310P (100% identity) | CCGG | HpyLIM1ORF1295P |
| 1295 | M | M.HpyPE14ORF1310P (100% identity) | CCGG | M.HpyLIM1ORF1295P |
| 1300 | AAA domain-containing protein | |||
| 1535 | polysaccharide deacetylase | |||
| 1540 | R | HpyPE14VP (100% identity) | CTNAG | HpyLIM1VIIP |
| 1545 | M | M.HpyPE14V (100% identity) | CTNAG | M.HpyLIM1VII |
| 1550 | 125 aa hypothetical protein | |||
| 2360 | Hop family outer membrane protein HopJ/HopK | |||
| 2365 | M | M.HpyPE14II (100% identity) | ATTAAT | M.HpyLIM1IV |
| 2370 | glycosyltransferase family 9 protein | |||
| 2375 | translational GTPase TypA | |||
| 2380 | M | M.HpyPE14III (100% identity) | ACNGT | M.HpyLIM1III |
| 2385 | R | HpyPE14IIIP (100% identity) | ACNGT | HpyLIM1IIIP |
| 2390 | DNA cytosine methyltransferase | |||
| 2385 | GIY-YIG nuclease family protein | |||
| 2390 | M | M.HpyPE14ORF2405P (100% identity) | ACGT | M.HpyLIM1ORF2390P |
| 2395 | R | HpyPE14ORF2405P (100% identity) | ACGT | HpyLIM1ORF2390P |
| 2400 | catalase | |||
| 2485 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 2490 | M | M.HpyPE14ORF2505P (100% identity) | GTAC | M.HpyLIM1ORF2490P |
| 2495 | 93 aa hypothetical protein | |||
| 3370 | (Fe-S)-binding protein | |||
| 3375 | RM | HpyPE14ORF3380P (100% identity) | HpyLIM1ORF3375P | |
| 3380 | outer membrane protein | |||
| 3460 | 3-5 exonuclease | |||
| 3465 | M | M.HpyPE14IV (100% identity) | CCNNGG | M.HpyLIM1V |
| 3470 | R | HpyPU008VP (100% identity) | CCNNGG | HpyLIM1VP |
| 3475 | acetone carboxylase subunit gamma | |||
| 4545 | flagellar hook protein FlgE | |||
| ??? | R | HpyC126ORF4415P (95% identity) | GTNNAC | HpyLIM1IXP |
| ??? | M | M.HpyPE14XV (98% identity) | GTNNAC | M.HpyLIM1IX |
| 4560 | ATP-dependent helicase | |||
| 5190 | acetyl-CoA carboxylase biotin carboxylase | |||
| 5195 | M | M.HpyPE14VII (100% identity) | TCNNGA | M.HpyLIM1X |
| 5200 | R | HpyPE14VIIP (100% identity) | TCNNGA | HpyLIM1XP |
| 5205 | Laminin subunit alpha-2 precursor | |||
| 5380 | 144 aa hypothetical protein | |||
| ??? | M | M.HpyPE14XVII (98% identity) | GCGC | M.HpyLIM1ORF5385P |
| 5390 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 5845 | HAD family hydrolase | |||
| 5850 | M | M.HpyPE14IX (99% identity) | CATG | M.HpyLIM1ORF5850P |
| 5855 | R | HpySP13IP (100% identity) | CATG | HpyLIM1ORF5850P |
| 5860 | 47 aa hypothetical protein | |||
| 6575 | S41 family peptidase | |||
| 6580 | R | HpyPE14IP (100% identity) | GANTC | HpyLIM1VIIIP |
| 6585 | M | M.HpyPE14I (100% identity) | GANTC | M.HpyLIM1VIII |
| 6590 | N-6 DNA methylase | |||
| 6585 | site-specific DNA-methyltransferase | |||
| 6590 | RM | Hpy42KORF6845P (91% identity) | HpyLIM1ORF6590P | |
| 6595 | carboxylating nicotinate-nucleotide | |||
| 7050 | DNA polymerase I | |||
| 7055 | M | M1.HpyPE14XIV (100% identity) | GGATG | M1.HpyLIM1ORF7055P |
| 7060 | M | M2.HpyPE14XIV (100% identity) | GGATG | M2.HpyLIM1ORF7055P |
| 7065 | R | HpyPE14XIVP (100% identity) | GGATG | HpyLIM1ORF7055P |
| 7070 | ComF family protein | |||
| 7195 | YjgP/YjgQ family permease | |||
| ??? | M | M1.HpyPE14XI (79% identity) | CCATC | M1.HpyLIM1ORF7200P |
| 7205 | M | M2.HpySP403IV (100% identity) | CCATC | M2.HpyLIM1ORF7200P |
| 7210 | R | HpyPE18IIIP (100% identity) | CCATC | HpyLIM1ORF7200P |
| 7215 | outer membrane protein | |||
| 7290 | 173 aa hypothetical protein | |||
| 7295 | RM | HpyPE14ORF7315P (100% identity) | HpyLIM1ORF7295P | |
| 7300 | DEAD/DEAH box helicase family protein | |||
| 7455 | 67 aa hypothetical protein | |||
| 7460 | M | M.HpyPE14VIII (100% identity) | TGCA | M.HpyLIM1XI |
| ??? | R | Hpy228ORF6430P (98% identity) | TGCA | HpyLIM1XIP |
| 7470 | elongation factor Ts | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6645 | copper response regulator transcription factor | |||
| 6650 | M | M.HpyPE14ORF6660P (100% identity) | M.HpyLIM1ORF6650P | |
| 6655 | R | HpyPE14ORF6660P (100% identity) | HpyLIM1ORF6650P | |
| 6660 | rod shape-determining protein MreC | |||
| 6710 | DNA/RNA non-specific endonuclease | |||
| 6715 | M | M.HpyPE14XVIII (100% identity) | M.HpyLIM1ORF6715P | |
| 6720 | R | HpyPE14XVIIIP (100% identity) | HpyLIM1ORF6715P | |
| 6725 | biotin synthase | |||
| 7295 | class I SAM-dependent DNA methyltransferase | |||
| 7300 | R | HpyPE14ORF7325P (100% identity) | HpyLIM1ORF7305P | |
| 7305 | M | M.HpyPE14ORF7325P (100% identity) | M.HpyLIM1ORF7305P | |
| 7310 | ATP-dependent DNA helicase RecG | |||