Helicobacter pylori LIM-005 |
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Putative Helicobacter pylori LIM-005 RM systems
Ref: Gutierrez-Escobar,A.J. et al. Front Microbiol 11, 601839 (2020)
REBASE ref # 31890
Complete sequence: 1,619,464 bp
GenBank #: CP051537
REBASE acronym: HpyLIM5
Org_num: 48207
All begin HG578_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2145 | RNA degradosome polyphosphate kinase | |||
| 2155 | S | S.HpyCOL108III (98% identity) | CACNNNNNTTA | S.HpyLIM5ORF2160P |
| 2160 | M | M.HpyAR3ORF2125P (96% identity) | CACNNNNNTTA | M.HpyLIM5ORF2160P |
| 2165 | R | HpySP322ORF1585P (93% identity) | CACNNNNNTTA | HpyLIM5ORF2160P |
| 2170 | motility associated factor glycosyltransferase | |||
| 3630 | outer membrane beta-barrel protein HofF | |||
| 3635 | S | S.HpyLIM5ORF3940P (96% identity) | S.HpyLIM5ORF3635P | |
| 3640 | cadmium-translocating P-type ATPase | |||
| 3925 | hydroxyethylthiazole kinase | |||
| 3930 | R | HpyAs002ORF4335P (94% identity) | ACANNNNNNNTGG | HpyLIM5ORF3940P |
| 3935 | S | S.HpyLIM5ORF3635P (96% identity) | ACANNNNNNNTGG | S.HpyLIM5ORF3940P |
| 3940 | M | M.HpyH006XVI (94% identity) | ACANNNNNNNTGG | M.HpyLIM5ORF3940P |
| 3945 | phosphatase PAP2 family protein | |||
| 7215 | 60 aa hypothetical protein | |||
| 7220 | S | S.HpyLIM5ORF7225P (100% identity) | CCANNNNNNNTTTA | S.HpyLIM5XIV |
| 7225 | M | M.HpyLIM5ORF7225P (100% identity) | CCANNNNNNNTTTA | M.HpyLIM5XIV |
| 7230 | R | HpyLIM5ORF7225P (100% identity) | CCANNNNNNNTTTA | HpyLIM5XIVP |
| 7235 | M48 family metallopeptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 250 | agmatine deiminase | |||
| 255 | M | M1.HpyPE124III (99% identity) | CCTC | M1.HpyLIM5IV |
| 260 | M | M2.HpySP710ORF255P (90% identity) | CCTC | M2.HpyLIM5IVP |
| 265 | site-specific DNA-methyltransferase | |||
| 260 | DNA cytosine methyltransferase | |||
| ??? | M | M.HpyU001IX (99% identity) | GTSAC | M.HpyLIM5ORF265P |
| 270 | R | HpySP315XIP (99% identity) | GTSAC | HpyLIM5ORF265P |
| 275 | sodium/proline symporter PutP | |||
| 460 | 329 aa hypothetical protein | |||
| 465 | M | M.HpyPE14XIII (100% identity) | GATC | M.HpyLIM5VII |
| 470 | alpha-1,2-fucosyltransferase | |||
| 1255 | exodeoxyribonuclease VII large subunit | |||
| ??? | M | M.Hpy380ORF6050P (98% identity) | TCGA | M.HpyLIM5X |
| 1265 | endonuclease | |||
| 1260 | site-specific DNA-methyltransferase | |||
| 1265 | R | HpyCOL302IVP (99% identity) | CCGG | HpyLIM5XIIIP |
| 1270 | M | M.HpySWT06I (99% identity) | CCGG | M.HpyLIM5XIII |
| 1275 | AAA domain-containing protein | |||
| 1505 | polysaccharide deacetylase | |||
| 1510 | R | HpyU204VIIP (100% identity) | CTNAG | HpyLIM5VP |
| 1515 | M | M.HpyU204VII (100% identity) | CTNAG | M.HpyLIM5V |
| 1520 | 125 aa hypothetical protein | |||
| 2230 | Hop family outer membrane protein HopJ/HopK | |||
| 2235 | M | M.HpyU403III (96% identity) | ATTAAT | M.HpyLIM5II |
| 2240 | glycosyltransferase family 9 protein | |||
| 2245 | translational GTPase TypA | |||
| 2250 | M | M.HpyPE108II (100% identity) | ACNGT | M.HpyLIM5XII |
| ??? | R | HpySP403IIP (92% identity) | ACNGT | HpyLIM5XIIP |
| 2265 | DNA cytosine methyltransferase | |||
| 2260 | type II restriction endonuclease | |||
| ??? | M | M.HpySP313ORF2265P (100% identity) | ACGT | M.HpyLIM5ORF2265P |
| ??? | R | HpySG04ORF2435P (86% identity) | ACGT | HpyLIM5ORF2265P |
| 2285 | catalase | |||
| 2375 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 2380 | M | M.HpyPE108VIII (99% identity) | GTAC | M.HpyLIM5VIII |
| 2385 | R | HpyPE108VIIIP (99% identity) | GTAC | HpyLIM5VIIIP |
| 2390 | M23 family metallopeptidase | |||
| 3030 | (Fe-S)-binding protein | |||
| 3035 | RM | HpyPE108ORF3205P (89% identity) | HpyLIM5ORF3035P | |
| 3040 | SIR2 family protein | |||
| 3130 | 3-5 exonuclease | |||
| ??? | M | M.HpyC018ORF3620P (96% identity) | CCNNGG | M.HpyLIM5ORF3135P |
| 3140 | R | HpyPE17ORF3810P (99% identity) | CCNNGG | HpyLIM5ORF3135P |
| 3145 | acetone carboxylase subunit gamma | |||
| 3325 | 101 aa hypothetical protein | |||
| 3330 | R | HpyPE124ORF2995P (100% identity) | HpyLIM5ORF3335P | |
| 3335 | M | M1.HpyU305ORF3485P (100% identity) | M1.HpyLIM5ORF3335P | |
| 3340 | M | M2.HpyU203ORF3725P (100% identity) | M2.HpyLIM5ORF3335P | |
| 3345 | IS1595 family transposase | |||
| 4205 | flagellar hook protein FlgE | |||
| 4210 | R | HpyT016XIIP (97% identity) | GTNNAC | HpyLIM5IXP |
| ??? | M | M.HpyDO1VIII (97% identity) | GTNNAC | M.HpyLIM5IX |
| 4220 | ATP-dependent helicase | |||
| 5020 | methyltransferase | |||
| ??? | M | M.HpySP322ORF1875P (100% identity) | TCNNGA | M.HpyLIM5ORF5025P |
| 5030 | R | HpyU208ORF1415P (100% identity) | TCNNGA | HpyLIM5ORF5025P |
| 5035 | Laminin subunit alpha-2 precursor | |||
| 5210 | 144 aa hypothetical protein | |||
| ??? | M | M.HpyV001XVII (95% identity) | GCGC | M.HpyLIM5ORF5215P |
| 5220 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 5660 | HAD family hydrolase | |||
| 5665 | M | M.HpyPE124I (97% identity) | CATG | M.HpyLIM5I |
| ??? | R | HpyPE05IP (75% identity) | CATG | HpyLIM5IP |
| 5675 | serine O-acetyltransferase | |||
| 6375 | S41 family peptidase | |||
| ??? | R | HpyU009VIP (97% identity) | GANTC | HpyLIM5VIP |
| 6390 | M | M.Hpy42KORF6835P (98% identity) | GANTC | M.HpyLIM5VI |
| 6395 | N-6 DNA methylase | |||
| 6390 | site-specific DNA-methyltransferase | |||
| 6395 | RM | HpySW05ORF6670P (91% identity) | HpyLIM5ORF6395P | |
| 6400 | carboxylating nicotinate-nucleotide | |||
| 6630 | glycosyltransferase family 8 protein | |||
| 6635 | R | HpySP313ORF7405P (100% identity) | HpyLIM5ORF6635P | |
| 6640 | DNA (cytosine-5-)-methyltransferase | |||
| 6635 | ThaI family type II restriction endonuclease | |||
| 6640 | M | M.Hpy328ORF6975P (99% identity) | M.HpyLIM5ORF6640P | |
| 6645 | UDP-N-acetylmuramate dehydrogenase | |||
| 6905 | DNA polymerase I | |||
| 6910 | S | S.HpyHPYORF285P (44% identity) | S2.HpyLIM5ORF6920P | |
| 6915 | S | S1.HpyP007ORF7365P (95% identity) | S1.HpyLIM5ORF6920P | |
| 6920 | RM | HpyPE108ORF7065P (98% identity) | HpyLIM5ORF6920P | |
| 6925 | ComF family protein | |||
| 7050 | YjgP/YjgQ family permease | |||
| ??? | M | M1.HpyUM037VI (79% identity) | CCATC | M1.HpyLIM5III |
| 7060 | M | M2.HpySP707III (100% identity) | CCATC | M2.HpyLIM5III |
| 7065 | R | Hpyfe82ORF150P (95% identity) | CCATC | HpyLIM5IIIP |
| 7070 | outer membrane protein | |||
| 7140 | 184 aa hypothetical protein | |||
| 7145 | RM | HpyT005ORF7045P (78% identity) | HpyLIM5ORF7145P | |
| 7150 | DEAD/DEAH box helicase family protein | |||
| 7215 | 60 aa hypothetical protein | |||
| 7220 | S | S.HpyLIM5XIV (100% identity) | S.HpyLIM5ORF7225P | |
| 7225 | M | M.HpyLIM5XIV (100% identity) | M.HpyLIM5ORF7225P | |
| 7230 | R | HpyLIM5XIVP (100% identity) | HpyLIM5ORF7225P | |
| 7235 | M48 family metallopeptidase | |||
| 7305 | 67 aa hypothetical protein | |||
| 7310 | M | M.HpyNCI55II (99% identity) | TGCA | M.HpyLIM5XI |
| 7315 | R | HpySP707XIIIP (100% identity) | TGCA | HpyLIM5XIP |
| 7320 | anthranilate synthase component I | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6450 | copper response regulator transcription factor | |||
| 6455 | M | M.HpyNCI18ORFC1P (94% identity) | M.HpyLIM5ORF6455P | |
| 6460 | R | HpyC008ORF6555P (87% identity) | HpyLIM5ORF6455P | |
| 6465 | rod shape-determining protein MreC | |||
| 6510 | DNA/RNA non-specific endonuclease | |||
| 6515 | M | M.HpyI029ORF6585P (96% identity) | M.HpyLIM5ORF6515P | |
| 6520 | R | HpyGRE039XIIP (94% identity) | HpyLIM5ORF6515P | |
| 6525 | biotin synthase | |||
| 7145 | class I SAM-dependent DNA methyltransferase | |||
| 7150 | R | HpyDO5ORF7670P (95% identity) | HpyLIM5ORF7155P | |
| 7155 | M | M.HpyGRE018ORF7400P (96% identity) | M.HpyLIM5ORF7155P | |
| 7160 | ATP-dependent DNA helicase RecG | |||