Helicobacter pylori LIM-008 |
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Putative Helicobacter pylori LIM-008 RM systems
Ref: Gutierrez-Escobar,A.J. et al. Front Microbiol 11, 601839 (2020)
REBASE ref # 31890
Complete sequence: 1,667,949 bp
GenBank #: CP051535
REBASE acronym: HpyLIM8
Org_num: 48210
All begin HG581_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2105 | RNA degradosome polyphosphate kinase | |||
| 2115 | S | S.HpyAL2ORF2145P (100% identity) | CACNNNNNTTA | S.HpyLIM8ORF2120P |
| 2120 | M | M.HpyLI08ORF2090P (94% identity) | CACNNNNNTTA | M.HpyLIM8ORF2120P |
| 2125 | R | HpySWT05ORF2155P (93% identity) | CACNNNNNTTA | HpyLIM8ORF2120P |
| 2130 | motility associated factor glycosyltransferase | |||
| 3790 | outer membrane beta-barrel protein HofF | |||
| 3795 | S | S.HpyF011V (97% identity) | CRTANNNNNNNTG | S.HpyLIM8X |
| 3800 | cadmium-translocating P-type ATPase | |||
| 7525 | 303 aa hypothetical protein | |||
| 7530 | S | S.HpySP01XIII (98% identity) | TCTANNNNNNRTAA | S.HpyLIM8XI |
| 7535 | M | M.HpyJ182ORF605P (95% identity) | TCTANNNNNNRTAA | M.HpyLIM8XI |
| 7540 | R | Hpy29ORF7730P (95% identity) | TCTANNNNNNRTAA | HpyLIM8XIP |
| 7545 | M48 family metallopeptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 250 | agmatine deiminase | |||
| 255 | M | M1.HpyNCI55VIII (100% identity) | CCTC | M1.HpyLIM8III |
| 260 | M | M2.HpyPE124IIIP (98% identity) | CCTC | M2.HpyLIM8IIIP |
| ??? | R | HpyPE08IVP (76% identity) | CCTC | HpyLIM8IIIP |
| 270 | DNA cytosine methyltransferase | |||
| 470 | 337 aa hypothetical protein | |||
| 475 | M | M.HpyPU009VIII (100% identity) | GATC | M.HpyLIM8V |
| 480 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 1255 | exodeoxyribonuclease VII large subunit | |||
| ??? | M | M.HpyLIM3X (98% identity) | TCGA | M.HpyLIM8IX |
| 1265 | 204 aa hypothetical protein | |||
| 1265 | 204 aa hypothetical protein | |||
| 1270 | R | HpyCOL211ORF1290P (100% identity) | CCGG | HpyLIM8ORF1275P |
| 1275 | M | M.HpyPE130ORF1295P (99% identity) | CCGG | M.HpyLIM8ORF1275P |
| 1280 | AAA domain-containing protein | |||
| 2190 | Hop family outer membrane protein HopJ/HopK | |||
| 2195 | M | M.HpyPO07VII (96% identity) | ATTAAT | M.HpyLIM8ORF2195P |
| 2200 | glycosyltransferase family 9 protein | |||
| 2205 | translational GTPase TypA | |||
| 2210 | M | M.HpyPE103ORF2230P (100% identity) | ACGT | M.HpyLIM8ORF2210P |
| 2215 | R | Hpy376ORF5895P (100% identity) | ACGT | HpyLIM8ORF2210P |
| 2220 | catalase | |||
| 2495 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 2500 | M | M.HpyB38ORF850P (98% identity) | GTAC | M.HpyLIM8VI |
| 2505 | R | HpyQ35ORFOP (90% identity) | GTAC | HpyLIM8VIP |
| 2510 | M23 family metallopeptidase | |||
| 3190 | (Fe-S)-binding protein | |||
| 3195 | RM | HpyCRI6ORF5180P (90% identity) | HpyLIM8ORF3195P | |
| 3200 | 451 aa hypothetical protein | |||
| 3285 | 3-5 exonuclease | |||
| 3290 | M | M.HpyPOR115IV (99% identity) | CCNNGG | M.HpyLIM8II |
| 3295 | R | HpySWT12ORF3110P (99% identity) | CCNNGG | HpyLIM8IIP |
| 3300 | 3-5 exonuclease | |||
| 4355 | flagellar hook protein FlgE | |||
| 4360 | R | HpyP009IXP (91% identity) | GTNNAC | HpyLIM8VIIP |
| ??? | M | M.HpyME35XI (96% identity) | GTNNAC | M.HpyLIM8VII |
| 4370 | ATP-dependent helicase | |||
| 5050 | methyltransferase | |||
| 5055 | M | M.HpySP19XIV (99% identity) | TCNNGA | M.HpyLIM8ORF5055P |
| 5060 | R | HpySW14IIIP (95% identity) | TCNNGA | HpyLIM8ORF5055P |
| 5065 | Laminin subunit alpha-2 precursor | |||
| 5240 | 144 aa hypothetical protein | |||
| ??? | M | M.HpyPE115XVI (94% identity) | GCGC | M.HpyLIM8ORF5245P |
| 5250 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 5695 | HAD family hydrolase | |||
| 5700 | M | M.HpyR04I (97% identity) | CATG | M.HpyLIM8I |
| ??? | R | HpyPU009IP (100% identity) | CATG | HpyLIM8IP |
| 5710 | serine O-acetyltransferase | |||
| 6510 | S41 family peptidase | |||
| 6515 | R | HpyU411IXP (97% identity) | GANTC | HpyLIM8IVP |
| 6520 | M | M.Hpy380ORF4810P (98% identity) | GANTC | M.HpyLIM8IV |
| 6525 | N-6 DNA methylase | |||
| 6520 | site-specific DNA-methyltransferase | |||
| 6525 | RM | HpyG019ORF6435P (82% identity) | HpyLIM8ORF6525P | |
| 6530 | carboxylating nicotinate-nucleotide | |||
| 7190 | DEAD/DEAH box helicase family protein | |||
| 7195 | RM | HpyI009XI (90% identity) | HpyLIM8ORF7195P | |
| 7200 | 176 aa hypothetical protein | |||
| 7285 | outer membrane protein | |||
| 7290 | R | HpyPE08ORF7525P (100% identity) | HpyLIM8ORF7290P | |
| 7295 | DNA cytosine methyltransferase | |||
| 7290 | AlwI family type II restriction endonuclease | |||
| 7295 | M | M.HpyME03ORF7345P (99% identity) | M.HpyLIM8ORF7295P | |
| 7300 | YjgP/YjgQ family permease | |||
| 7620 | 67 aa hypothetical protein | |||
| 7625 | M | M.HpyR06XIII (98% identity) | TGCA | M.HpyLIM8VIII |
| 7630 | R | HpySP707XIIIP (99% identity) | TGCA | HpyLIM8VIIIP |
| 7635 | cytochrome c1 | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2815 | 2-oxoglutarate:acceptor oxidoreductase | |||
| ??? | R | HpyPE103ORF4865P (96% identity) | HpyLIM8ORF2825P | |
| ??? | M | M.HpyPOR109ORF3785P (94% identity) | M.HpyLIM8ORF2825P | |
| 2830 | 54 aa hypothetical protein | |||
| 6580 | copper response regulator transcription factor | |||
| ??? | M | M.HpyF009ORF6685P (93% identity) | M.HpyLIM8ORF6585P | |
| 6595 | R | HpyGCT27ORF1400P (89% identity) | HpyLIM8ORF6585P | |
| 6600 | rod shape-determining protein MreC | |||
| 6645 | DNA/RNA non-specific endonuclease | |||
| 6650 | M | M.HpyPE103ORF6840P (97% identity) | M.HpyLIM8ORF6650P | |
| 6655 | IS200/IS605 family element transposase accessory | |||
| 6660 | IS200/IS605 family transposase | |||
| 6665 | R | HpyPE111ORF6655P (89% identity) | HpyLIM8ORF6650P | |
| 6670 | biotin synthase | |||
| 7175 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyCOL107ORF7420P (97% identity) | GWCAY | M.HpyLIM8ORF7180P |
| 7190 | R | HpyPE130ORF7355P (93% identity) | GWCAY | HpyLIM8ORF7180P |
| 7195 | class I SAM-dependent DNA methyltransferase | |||