Helicobacter pylori LIM-010 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori LIM-010 RM systems
Ref: Gutierrez-Escobar,A.J. et al. Front Microbiol 11, 601839 (2020)
REBASE ref # 31890
Complete sequence: 1,745,797 bp
GenBank #: CP051533
REBASE acronym: HpyLIM10
Org_num: 48212
All begin HG583_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2265 | RNA degradosome polyphosphate kinase | |||
| 2275 | S | S.HpyCOL302ORF4180P (98% identity) | GACNNNNNTTT | S.HpyLIM10ORF2280P |
| 2280 | M | M.HpySORF2270P (96% identity) | GACNNNNNTTT | M.HpyLIM10ORF2280P |
| 2285 | R | Hpy5016ORF4950P (92% identity) | GACNNNNNTTT | HpyLIM10ORF2280P |
| 2290 | motility associated factor glycosyltransferase | |||
| 7885 | FAD-dependent thymidylate synthase | |||
| 7890 | S | S.HpySH014VI (98% identity) | CRTANNNNNNNTC | S.HpyLIM10ORF7895P |
| 7895 | M | M.HpyNCI34ORFXP (95% identity) | CRTANNNNNNNTC | M.HpyLIM10ORF7895P |
| 7900 | R | HpyJO4XVP (95% identity) | CRTANNNNNNNTC | HpyLIM10ORF7895P |
| 7905 | M48 family metallopeptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 245 | agmatine deiminase | |||
| 250 | M | M1.HpySW14VI (98% identity) | CCTC | M1.HpyLIM10IV |
| 255 | M | M2.HpyF017VIIIP (96% identity) | CCTC | M2.HpyLIM10IVP |
| 260 | restriction endonuclease | |||
| 255 | DNA cytosine methyltransferase | |||
| 260 | R | Hpy280AORFIP (99% identity) | CCTTC | HpyLIM10VP |
| 265 | M | M.HpyG63ORFCP (98% identity) | CCTTC | M.HpyLIM10V |
| 270 | sodium/proline symporter PutP | |||
| 460 | 323 aa hypothetical protein | |||
| 465 | M | M.HpyAR2VIII (97% identity) | GATC | M.HpyLIM10VIII |
| 470 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 1300 | exodeoxyribonuclease VII large subunit | |||
| 1305 | M | M.HpyCRI6XIII (62% identity) | M.HpyLIM10ORF1305P | |
| 1310 | 152 aa hypothetical protein | |||
| 1395 | mobilization protein | |||
| ??? | M | M.HpySP807ORF1475P (94% identity) | M.HpyLIM10ORF1400P | |
| 1405 | AAA domain-containing protein | |||
| 2350 | Hop family outer membrane protein HopJ/HopK | |||
| 2355 | M | M.HpyNCI56XI (97% identity) | ATTAAT | M.HpyLIM10II |
| 2360 | glycosyltransferase family 9 protein | |||
| 2365 | translational GTPase TypA | |||
| 2370 | DNA adenine methylase | |||
| 2365 | translational GTPase TypA | |||
| 2370 | M | M.HpySP801II (99% identity) | ACNGT | M.HpyLIM10XIV |
| 2375 | R | HpySP409IIP (96% identity) | ACNGT | HpyLIM10XIVP |
| 2380 | DNA cytosine methyltransferase | |||
| 2375 | GIY-YIG nuclease family protein | |||
| 2380 | M | M.HpyCOL114ORF2095P (97% identity) | ACGT | M.HpyLIM10ORF2380P |
| 2385 | R | HpyUM065ORF7975P (99% identity) | ACGT | HpyLIM10ORF2380P |
| 2390 | catalase | |||
| 2470 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 2475 | M | M.HpySP501X (97% identity) | GTAC | M.HpyLIM10IX |
| 2480 | R | HpyME35XP (98% identity) | GTAC | HpyLIM10IXP |
| 2485 | 152 aa hypothetical protein | |||
| 3710 | (Fe-S)-binding protein | |||
| 3715 | RM | HpyID6ORF3280P (89% identity) | HpyLIM10ORF3715P | |
| 3720 | SIR2 family protein | |||
| 3805 | 3-5 exonuclease | |||
| 3810 | M | M.HpyPE105VI (100% identity) | CCNNGG | M.HpyLIM10III |
| 3815 | R | Hpyfe65ORF3785P (100% identity) | CCNNGG | HpyLIM10IIIP |
| 3820 | acetone carboxylase subunit gamma | |||
| 4875 | flagellar hook protein FlgE | |||
| 4880 | R | HpyL008XIP (98% identity) | GTNNAC | HpyLIM10XP |
| ??? | M | M.HpyL004X (96% identity) | GTNNAC | M.HpyLIM10X |
| 4890 | ATP-dependent helicase | |||
| 5550 | acetyl-CoA carboxylase biotin carboxylase | |||
| 5555 | M | M.HpyCO6XI (100% identity) | TCNNGA | M.HpyLIM10XII |
| 5560 | R | HpyBR5XIP (99% identity) | TCNNGA | HpyLIM10XIIP |
| 5565 | Laminin subunit alpha-2 precursor | |||
| 5750 | 144 aa hypothetical protein | |||
| ??? | M | M.HpyF002XV (96% identity) | M.HpyLIM10ORF5755P | |
| 5760 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 6035 | Hop family adhesin HopQ | |||
| 6040 | M | M.Hpy201097ORF1560P (99% identity) | TCNGA | M.HpyLIM10XI |
| 6045 | R | HpyPO06XP (99% identity) | TCNGA | HpyLIM10XIP |
| 6050 | purine-nucleoside phosphorylase | |||
| 6930 | S41 family peptidase | |||
| 6935 | R | Hpy5019ORF4255P (95% identity) | GANTC | HpyLIM10VIIP |
| 6940 | M | M.HpyCOL118VIII (99% identity) | GANTC | M.HpyLIM10VII |
| 6945 | DNA methyltransferase | |||
| 6940 | site-specific DNA-methyltransferase | |||
| ??? | RM | Hpy193ORFUP (86% identity) | HpyLIM10ORF6945P | |
| 6955 | carboxylating nicotinate-nucleotide | |||
| 7005 | copper response regulator transcription factor | |||
| 7010 | R | HpyU005XIIP (97% identity) | GAAGA | HpyLIM10VIP |
| 7015 | M | M2.HpySP103VII (99% identity) | GAAGA | M1.HpyLIM10VI |
| 7020 | M | M2.Hpyfe78ORF7125P (99% identity) | GAAGA | M2.HpyLIM10VI |
| 7025 | site-specific DNA-methyltransferase | |||
| 7590 | DNA polymerase I | |||
| 7595 | S | S.HpyT016ORF7185P (94% identity) | S.HpyLIM10ORF7600P | |
| 7600 | RM | HpyG012ORF7080P (98% identity) | HpyLIM10ORF7600P | |
| 7605 | ComF family protein | |||
| 7815 | 179 aa hypothetical protein | |||
| 7820 | RM | HpyCOL306ORF7435P (87% identity) | HpyLIM10ORF7820P | |
| 7825 | DEAD/DEAH box helicase family protein | |||
| 7985 | 67 aa hypothetical protein | |||
| 7990 | M | M.HpySP803XIV (98% identity) | TGCA | M.HpyLIM10XIII |
| 7995 | R | HpyR11XIIIP (99% identity) | TGCA | HpyLIM10XIIIP |
| 8000 | elongation factor Ts | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7020 | site-specific DNA-methyltransferase | |||
| ??? | M | M.Hpy4ORF4130P (95% identity) | M.HpyLIM10ORF7025P | |
| 7035 | R | HpyC100ORFPP (92% identity) | HpyLIM10ORF7025P | |
| 7040 | rod shape-determining protein MreC | |||
| 7095 | DNA/RNA non-specific endonuclease | |||
| 7100 | M | M.HpyC010ORF335P (95% identity) | M.HpyLIM10ORF7100P | |
| 7105 | R | Hpy228ORF6315P (93% identity) | HpyLIM10ORF7100P | |
| 7110 | biotin synthase | |||
| 7820 | class I SAM-dependent DNA methyltransferase | |||
| 7825 | R | HpyPOR112ORF7525P (94% identity) | HpyLIM10ORF7830P | |
| 7830 | M | M.HpySW24ORF7320P (94% identity) | M.HpyLIM10ORF7830P | |
| 7835 | ATP-dependent DNA helicase RecG | |||