Helicobacter pylori ASHA-002 |
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Putative Helicobacter pylori ASHA-002 RM systems
Ref: Gutierrez-Escobar,A.J. et al. Front Microbiol 11, 601839 (2020)
REBASE ref # 31890
Complete sequence: 1,640,012 bp
GenBank #: CP051291
REBASE acronym: HpyAs002
Org_num: 48196
All begin HGI44_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2215 | RNA degradosome polyphosphate kinase | |||
| 2225 | S | S.HpyI009ORF2175P (97% identity) | S.HpyAs002ORF2230P | |
| 2230 | M | M.HpyAs005XV (99% identity) | M.HpyAs002ORF2230P | |
| ??? | R | HpyAS001ORF2120P (99% identity) | HpyAs002ORF2230P | |
| 2245 | motility associated factor glycosyltransferase | |||
| 4035 | outer membrane beta-barrel protein HofF | |||
| 4040 | S | S.HpyAs002ORF4335P (100% identity) | S.HpyAs002ORF4040P | |
| 4045 | cadmium-translocating P-type ATPase | |||
| 4320 | hydroxyethylthiazole kinase | |||
| 4325 | R | HpyAS001ORF2365P (99% identity) | HpyAs002ORF4335P | |
| 4330 | S | S.HpyAs002ORF4040P (100% identity) | S.HpyAs002ORF4335P | |
| 4335 | M | M.HpyAs010ORF2390P (98% identity) | M.HpyAs002ORF4335P | |
| 4340 | DNA cytosine methyltransferase | |||
| 7050 | nickel-binding protein HpnL | |||
| 7055 | S | S.HpyPU009ORF6785P (96% identity) | S.HpyAs002ORF7055P | |
| 7060 | formyltetrahydrofolate deformylase | |||
| 7540 | 59 aa hypothetical protein | |||
| 7545 | S | S.Hpy169ORF7565P (99% identity) | S.HpyAs002ORF7555P | |
| 7550 | CAAX protease | |||
| 7555 | M | M.HpyAs004XIII (100% identity) | M.HpyAs002ORF7555P | |
| 7560 | R | HpyAs008XIIIP (99% identity) | HpyAs002ORF7555P | |
| 7565 | M48 family metallopeptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 245 | site-specific DNA-methyltransferase | |||
| 250 | M | M1.HpyAs005VI (99% identity) | CCTC | M1.HpyAs002VI |
| 255 | M | M2.HpyAs005VIP (99% identity) | CCTC | M2.HpyAs002VIP |
| 260 | R | HpyAs005VIP (100% identity) | CCTC | HpyAs002VIP |
| 265 | DNA cytosine methyltransferase | |||
| 455 | ACP S-malonyltransferase | |||
| 465 | R | HpyAs010VIP (100% identity) | GATC | HpyAs002VIIIP |
| 470 | M | M.HpyAs010VI (100% identity) | GATC | M.HpyAs002VIII |
| 475 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 1265 | exodeoxyribonuclease VII large subunit | |||
| ??? | M | M.HpyAs010ORF1260P (100% identity) | TCGA | M.HpyAs002X |
| 1275 | 204 aa hypothetical protein | |||
| 1275 | 204 aa hypothetical protein | |||
| 1280 | R | HpyAs010ORF1275P (100% identity) | CCGG | HpyAs002IVP |
| 1285 | M | M.HpyAs005IV (100% identity) | CCGG | M.HpyAs002IV |
| 1290 | AAA domain-containing protein | |||
| 2305 | Hop family outer membrane protein HopJ/HopK | |||
| 2310 | M | M.HpyAs010III (100% identity) | ATTAAT | M.HpyAs002III |
| 2315 | glycosyltransferase family 9 protein | |||
| 2320 | translational GTPase TypA | |||
| 2325 | M | M.HpyAs010II (100% identity) | ACNGT | M.HpyAs002II |
| 2330 | R | HpyAs010IIP (100% identity) | ACNGT | HpyAs002IIP |
| 2335 | DNA cytosine methyltransferase | |||
| 2330 | GIY-YIG nuclease family protein | |||
| 2335 | M | M.HpyJSHR31ORF9370P (98% identity) | ACGT | M.HpyAs002ORF2335P |
| 2340 | R | HpyU428ORF2270P (94% identity) | ACGT | HpyAs002ORF2335P |
| 2345 | catalase | |||
| 3425 | (Fe-S)-binding protein | |||
| 3430 | RM | HpyAS001ORF3250P (99% identity) | HpyAs002ORF3430P | |
| 3435 | 405 aa hypothetical protein | |||
| 3515 | 3-5 exonuclease | |||
| 3520 | M | M.HpyAs010IV (100% identity) | CCNNGG | M.HpyAs002V |
| 3525 | R | Hpyfe65ORF3785P (100% identity) | CCNNGG | HpyAs002VP |
| 3530 | 3-5 exonuclease | |||
| 4335 | type I restriction-modification system subunit | |||
| 4340 | M | M.HpysHP34ORF6260P (100% identity) | M.HpyAs002ORF4340P | |
| 4345 | R | HpyAs010ORF2385P (99% identity) | HpyAs002ORF4340P | |
| 4350 | DNA-binding protein | |||
| 4570 | flagellar hook protein FlgE | |||
| 4575 | R | HpyAs010VIIP (100% identity) | GTNNAC | HpyAs002IXP |
| ??? | M | M.HpySORF4790P (99% identity) | GTNNAC | M.HpyAs002IX |
| 4585 | ATP-dependent helicase | |||
| 5410 | acetyl-CoA carboxylase biotin carboxylase | |||
| 5415 | M | M.HpyAs009XII (99% identity) | TCNNGA | M.HpyAs002XI |
| 5420 | R | HpyAs009XIIP (100% identity) | TCNNGA | HpyAs002XIP |
| 5425 | Laminin subunit alpha-2 precursor | |||
| 5600 | 144 aa hypothetical protein | |||
| ??? | M | M.HpyAs010ORF5530P (100% identity) | M.HpyAs002ORF5605P | |
| 5610 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 6055 | HAD family hydrolase | |||
| 6060 | M | M.HpyAs010I (100% identity) | CATG | M.HpyAs002I |
| 6065 | IceA2 protein | |||
| 6755 | PDZ domain-containing protein | |||
| 6760 | R | HpyAs010ORF6705P (100% identity) | GANTC | HpyAs002VIIP |
| 6765 | M | M.HpyAs010ORF6705P (100% identity) | GANTC | M.HpyAs002VII |
| 6770 | N-6 DNA methylase | |||
| 6765 | site-specific DNA-methyltransferase | |||
| 6770 | RM | Hpy1198ORF2360P (87% identity) | HpyAs002ORF6770P | |
| 6775 | carboxylating nicotinate-nucleotide | |||
| 6835 | site-specific DNA-methyltransferase | |||
| 6840 | R | HpyAs010ORF6785P (100% identity) | HpyAs002ORF6845P | |
| 6845 | M | M.HpyAs010ORF6785P (100% identity) | M.HpyAs002ORF6845P | |
| 6850 | site-specific DNA-methyltransferase | |||
| 7250 | DNA polymerase I | |||
| 7255 | S | S.HpyH004ORF6990P (95% identity) | CYANNNNNNTGA | S.HpyAs002XIII |
| 7260 | RM | HpySH011ORF7020P (98% identity) | CYANNNNNNTGA | HpyAs002XIII |
| 7265 | ComF family protein | |||
| 7465 | transcription termination/antitermination | |||
| 7470 | RM | HpyC82ORFJP (77% identity) | HpyAs002ORF7470P | |
| 7475 | DEAD/DEAH box helicase family protein | |||
| 7645 | 67 aa hypothetical protein | |||
| 7650 | M | M.HpyAs010IX (100% identity) | TGCA | M.HpyAs002XII |
| 7655 | R | HpyAs010IXP (100% identity) | TGCA | HpyAs002XIIP |
| 7660 | 107 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6845 | Dam family site-specific | |||
| ??? | M | M.HpyAs010ORF6790P (97% identity) | M.HpyAs002ORF6850P | |
| 6860 | R | HpyAs010ORF6790P (100% identity) | HpyAs002ORF6850P | |
| 6865 | rod shape-determining protein MreC | |||
| 6910 | DNA/RNA non-specific endonuclease | |||
| 6915 | M | M.HpyAs005ORF6790P (100% identity) | M.HpyAs002ORF6915P | |
| 6920 | R | HpyAs005ORF6790P (97% identity) | HpyAs002ORF6915P | |
| 6925 | biotin synthase | |||
| 7470 | class I SAM-dependent DNA methyltransferase | |||
| 7475 | R | HpyAs010ORF7415P (100% identity) | HpyAs002ORF7480P | |
| 7480 | M | M.HpyAS001ORF7315P (99% identity) | M.HpyAs002ORF7480P | |
| 7485 | ATP-dependent DNA helicase RecG | |||