Escherichia coli U90 |
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Putative Escherichia coli U90 RM systems
Ref: Ma,J. et al. unpublished
REBASE ref # 31864
| Sequence length: | GenBank #: | |
| Chromosome: | 5,179,383 bp | CP068035 |
| plasmid pU90-3: | 5,597 bp | CP068038 |
| plasmid pU90-5: | 126,454 bp | CP068040 |
REBASE acronym: EcoU90
Org_num: 46806
All begin JKF55_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3795 | endoribonuclease SymE | |||
| ??? | S | S.EcoSC476ORFAP (100% identity) | TGANNNNNNNNTGCT | S.EcoU90ORF3805P |
| 3805 | M | M.Ecocq9ORF4140P (100% identity) | TGANNNNNNNNTGCT | M.EcoU90ORF3805P |
| 3810 | R | Ssp28760ORF3465P (100% identity) | TGANNNNNNNNTGCT | EcoU90ORF3805P |
| 3815 | adenine/cytosine-specific restriction | |||
| 20670 | AAA family ATPase | |||
| 20675 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.EcoU90ORF20680P |
| 20680 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.EcoU90ORF20680P |
| 20685 | R | SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | EcoU90ORF20680P |
| 20690 | transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4060 | DUF262 domain-containing protein | |||
| 4065 | RM | SflLIN6ORF19750P (100% identity) | EcoU90ORF4065P | |
| 4070 | BREX-1 system phosphatase PglZ type A | |||
| 12890 | DUF977 family protein | |||
| ??? | M | M.SsoSE61ORF20220P (100% identity) | M.EcoU90ORF12895P | |
| 12900 | 95 aa hypothetical protein | |||
| 14955 | drug/metabolite exporter YedA | |||
| 14960 | V | V.SflFF59DcmP (100% identity) | V.EcoU90DcmP | |
| 14965 | M | M.SflFF59DcmP (100% identity) | CCWGG | M.EcoU90DcmP |
| 14970 | phosphohydrolase | |||
| 18540 | Shiga toxin Stx2e subunit A | |||
| 18560 | M | M.Ecocq9ORF19465P (100% identity) | M.EcoU90ORF18560P | |
| 18565 | TrmB family transcriptional regulator | |||
| 22505 | DNA-binding transcriptional regulator Fis | |||
| 22510 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcoU90ORF22510P |
| 22515 | DUF2556 family protein | |||
| 23130 | ribulose-phosphate 3-epimerase | |||
| 23135 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoU90DamP |
| 23140 | cell division protein DamX | |||
| plasmid pU90-3 | ||||
| 25530 | MbeD family mobilization/exclusion protein | |||
| ??? | R | SsoI (91% identity) | GAATTC | EcoU90ORF25540P |
| 25540 | M | M.SsoI (100% identity) | GAATTC | M.EcoU90ORF25540P |
| plasmid pU90-5 | ||||
| 26685 | 73 aa hypothetical protein | |||
| 26690 | M | M.Ecocq9ORF29710P (99% identity) | M.EcoU90ORF26690P | |
| 26695 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3785 | R | Ssp28760McrCP (100% identity) | EcoU90McrCP | |
| 3790 | R | Ssp28760McrBP (100% identity) | EcoU90McrBP | |
| 3795 | endoribonuclease SymE | |||
| 3810 | type I restriction-modification system | |||
| 3815 | R | Ssp28760MrrP (100% identity) | EcoU90MrrP | |
| 3820 | GTPase | |||