Salmonella enterica subsp. enterica serovar Reading CVM 21978 |
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Putative Salmonella enterica subsp. enterica serovar Reading CVM 21978 RM systems
Ref: Zhao,S. et al. Genes (Basel) 11 (9), E1025 (2020)
REBASE ref # 31880
| Sequence length: | GenBank #: | |
| Chromosome: | 4,872,740 bp | CP051449 |
| plasmid p21978-1: | 168,106 bp | CP051451 |
| plasmid p21978-2: | 93,550 bp | CP051450 |
REBASE acronym: Sen21978
Org_num: 46921
All begin HFQ72_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20980 | restriction endonuclease | |||
| 20985 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | Sen21978ORF20990P |
| 20990 | M | M.StyLTIII (100% identity) | GAGNNNNNNRTAYG | M.Sen21978ORF20990P |
| 20995 | S | S.Sens29868ORF20005P (100% identity) | GAGNNNNNNRTAYG | S.Sen21978ORF20990P |
| 21000 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2205 | DGQHR domain-containing protein | |||
| 2210 | M | M.Sph9TCWORF31P (100% identity) | M.Sen21978ORF2210P | |
| 2215 | 59 aa hypothetical protein | |||
| 6225 | DNA-binding transcriptional regulator Fis | |||
| 6230 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen21978ORF6230P |
| 6235 | DUF2556 family protein | |||
| 6715 | ribulose-phosphate 3-epimerase | |||
| 6720 | M | M.StyTDamP (100% identity) | GATC | M.Sen21978DamP |
| 6725 | cell division protein DamX | |||
| 10600 | phosphohydrolase | |||
| 10605 | M | M.Sens29868DcmP (100% identity) | CCWGG | M.Sen21978DcmP |
| 10610 | V | V.StyUK1DcmP (100% identity) | V.Sen21978DcmP | |
| 10615 | drug/metabolite exporter YedA | |||
| 15690 | YqaJ viral recombinase family protein | |||
| 15695 | M | M.SspsA7ORF8410P (100% identity) | GATC | M.Sen21978ORF15695P |
| 15700 | DUF4060 family protein | |||
| 21120 | YebC/PmpR family DNA-binding transcriptional | |||
| 21125 | R | Sens29868ORF20140P (100% identity) | Sen21978ORF21125P | |
| 21130 | fosfomycin resistance glutathione transferase | |||
| 21150 | RM | Sens29868ORF20165P (100% identity) | Sen21978ORF21150P | |
| 21155 | DEAD/DEAH box helicase | |||
| 22660 | LexA family transcriptional regulator | |||
| 22665 | M | M.Sso90ORF15820P (100% identity) | GATC | M.Sen21978ORF22665P |
| 22670 | helix-turn-helix domain-containing protein | |||
| plasmid p21978-1 | ||||
| 24965 | 143 aa hypothetical protein | |||
| 24970 | M | M.YrupYR1ORFCP (100% identity) | M.Sen21978ORF24970P | |
| 24975 | 100 aa hypothetical protein | |||
| plasmid p21978-2 | ||||
| 23930 | 104 aa hypothetical protein | |||
| 23935 | M | M.EcoGu016ORF25080P (100% identity) | M.Sen21978ORF23935P | |
| 23940 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18755 | 33 aa hypothetical protein | |||
| 18760 | R | Sens29868ORF17775P (100% identity) | CAGAG | Sen21978ORF18765P |
| 18765 | M | M.StyTORF2507P (100% identity) | CAGAG | M.Sen21978ORF18765P |
| 18770 | MFS transporter | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20975 | BrnT family toxin | |||
| 20980 | R | StyUK1MrrP (100% identity) | Sen21978MrrP | |
| 20985 | type I restriction-modification system | |||