Escherichia coli O25:H4 18044 |
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Putative Escherichia coli O25:H4 18044 RM systems
Ref: Nagaoka,H. et al. J Food Prot 83 (9), 1584-1591 (2020)
REBASE ref # 31847
| Sequence length: | GenBank #: | |
| Chromosome: | 5,038,168 bp | AP022326 |
| plasmid p18044_1: | 139,450 bp | AP022327 |
REBASE acronym: Eco18044
Org_num: 46736
All begin ECO25NV_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 36840 | 260 aa hypothetical protein | |||
| 36850 | R | EcosS9ORF4930P (100% identity) | Eco18044ORF36860P | |
| 36860 | M | M.EcosS9ORF4930P (100% identity) | M.Eco18044ORF36860P | |
| 36870 | S | S.Ecop4AORF19495P (56% identity) | S1.Eco18044ORF36860P | |
| 36880 | transposase | |||
| ??? | S | S.Ecop4AORF19495P (40% identity) | S2.Eco18044ORF36860P | |
| 36890 | 61 aa hypothetical protein | |||
| 40310 | 388 aa hypothetical protein | |||
| ??? | M | M.EcoZLWTORF20795P (100% identity) | RTACNNNNGTG | M.Eco18044ORF40320P |
| 40330 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.Eco18044ORF40320P |
| 40340 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | Eco18044ORF40320P |
| 40350 | endoribonuclease SymE | |||
| plasmid p18044_1 | ||||
| 48770 | 383 aa hypothetical protein | |||
| 48780 | S | S.SenBR076ORFFP (100% identity) | CAAYNNNNNCTGG | S.Eco18044ORF48790P |
| 48790 | M | M.SenceORFJP (100% identity) | CAAYNNNNNCTGG | M.Eco18044ORF48790P |
| 48800 | 73 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3350 | cell division protein DamX | |||
| ??? | M | M.SspPIBDamP (100% identity) | GATC | M.Eco18044DamP |
| 3370 | ribulose-phosphate 3-epimerase | |||
| 4470 | acrEF/envCD operon transcriptional regulator | |||
| 4480 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.Eco18044ORF4480P |
| 4490 | DNA-binding protein Fis | |||
| 18460 | phosphohydrolase | |||
| 18470 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.Eco18044DcmP |
| 18480 | V | V.SflC32DcmP (74% identity) | V.Eco18044DcmP | |
| 18490 | inner membrane transporter YedA | |||
| 25210 | anti-adapter protein IraM | |||
| 25220 | M | M.EcosS9ORF10680P (100% identity) | A | M.Eco18044ORF25220P |
| 25230 | 65 aa hypothetical protein | |||
| 29740 | 118 aa hypothetical protein | |||
| 29750 | M | M.KpnYN1ORFGP (89% identity) | M.Eco18044ORF29750P | |
| 29760 | 71 aa hypothetical protein | |||
| 40760 | mcrBC 5-methylcytosine restriction system | |||
| 40770 | R | EcosS9ORF2810P (100% identity) | GGTCTC | Eco18044ORF40780P |
| 40780 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.Eco18044ORF40780P |
| 40790 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M2.Eco18044ORF40780P |
| 40800 | 141 aa hypothetical protein | |||
| plasmid p18044_1 | ||||
| 48640 | 73 aa hypothetical protein | |||
| 48650 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.Eco18044ORF48650P |
| 48660 | 308 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 40740 | 84 aa hypothetical protein | |||
| 40750 | R | EcosS3McrBP (100% identity) | Eco18044McrBP | |
| 40760 | R | EcosS9McrCP (100% identity) | Eco18044McrCP | |
| 40770 | 579 aa hypothetical protein | |||