Citrobacter freundii Cfr-13 |
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Putative Citrobacter freundii Cfr-13 RM systems
Ref: Kohler,P. et al. Sci Rep 10 (1), 18580 (2020)
REBASE ref # 31663
| Sequence length: | GenBank #: | |
| Chromosome: | 5,050,163 bp | CP047773 |
| plasmid pCfr13-1: | 85,777 bp | CP047774 |
| plasmid pCfr13-2: | 81,066 bp | CP047775 |
REBASE acronym: CfrCfr13
Org_num: 46183
All begin GVI61_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21290 | TIR domain-containing protein | |||
| 21295 | R | Mmo88ORFEP (99% identity) | CfrCfr13ORF21300P | |
| 21300 | M | M.Eco4282ORFDP (98% identity) | M.CfrCfr13ORF21300P | |
| 21305 | S | S.EcosAW17ORF20460P (100% identity) | S.CfrCfr13ORF21300P | |
| 21310 | 529 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1770 | cell division protein DamX | |||
| 1775 | M | M.Eco11104DamP (100% identity) | GATC | M.CfrCfr13DamP |
| 1780 | ribulose-phosphate 3-epimerase | |||
| 2270 | DUF2556 domain-containing protein | |||
| 2275 | M | M.Csp302ORFAP (100% identity) | ATGCAT | M.CfrCfr13ORF2275P |
| 2280 | DNA-binding transcriptional regulator Fis | |||
| 5740 | 118 aa hypothetical protein | |||
| 5745 | R | CpoC275ORFBP (100% identity) | C | CfrCfr13ORF5745P |
| 5750 | DNA primase | |||
| 6145 | DUF550 domain-containing protein | |||
| 6150 | M | M.Ceu3ORFCP (88% identity) | M.CfrCfr13ORF6150P | |
| 6155 | 83 aa hypothetical protein | |||
| 6240 | NinG family protein | |||
| 6245 | M | M.Cfr370ORF6320P (99% identity) | M.CfrCfr13ORF6245P | |
| 6250 | antitermination protein | |||
| 9695 | phosphohydrolase | |||
| 9700 | M | M.Cpo52230ORF18760P (100% identity) | CCWGG | M.CfrCfr13ORF9700P |
| 9705 | V | V.CpoK218ORF11815P (100% identity) | V.CfrCfr13ORF9700P | |
| 9710 | drug/metabolite exporter YedA | |||
| 18090 | 94 aa hypothetical protein | |||
| 18095 | M | M.Esp422ORF5740P (96% identity) | M.CfrCfr13ORF18095P | |
| 18100 | 72 aa hypothetical protein | |||
| 21195 | FAD-dependent oxidoreductase | |||
| ??? | R | Cpo5ORF14650P (100% identity) | CfrCfr13ORF21200P | |
| 21205 | helix-turn-helix domain-containing protein | |||
| plasmid pCfr13-1 | ||||
| 24410 | recombination-associated protein RdgC | |||
| 24415 | M | M.CpoC01ORF25370P (99% identity) | M.CfrCfr13ORF24415P | |
| 24420 | 97 aa hypothetical protein | |||
| plasmid pCfr13-2 | ||||
| 25125 | IS6-like element IS6100 family transposase | |||
| 25130 | R | YpsR1ORFAP (100% identity) | CCWGG | CfrCfr13ORF25135P |
| ??? | M | M.SflLIN11ORF24665P (100% identity) | CCWGG | M.CfrCfr13ORF25135P |
| 25140 | IS1 family transposase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 15495 | integrase arm-type DNA-binding domain-containing | |||
| 15500 | M | M.Cfr2206ORF15970P (99% identity) | GCGCAG | M.CfrCfr13ORF15500P |
| 15505 | R | Cfr023IVP (41% identity) | GCGCAG | CfrCfr13ORF15500AP |
| 15510 | IS3 family transposase | |||
| 15515 | IS1 family transposase | |||
| 15520 | R | Cfr023IVP (57% identity) | GCGCAG | CfrCfr13ORF15500BP |
| 15525 | shufflon system plasmid conjugative transfer | |||