Escherichia coli 25DN |
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Putative Escherichia coli 25DN RM systems
Ref: Cao,G. unpublished
REBASE ref # 28456
Complete sequence: 5,132,098 bp
GenBank #: CP063983
REBASE acronym: Eco25DN
Org_num: 45760
All begin IR210_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 20795 | restriction endonuclease | |||
| ??? | M | M.EcoZLWTORF20795P (100% identity) | RTACNNNNGTG | M.Eco25DNORF20800P |
| 20805 | S | S.Ecou021ORF19870P (99% identity) | RTACNNNNGTG | S.Eco25DNORF20800P |
| 20810 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | Eco25DNORF20800P |
| 20815 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1775 | cell division protein DamX | |||
| 1780 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco25DNDamP |
| 1785 | ribulose-phosphate 3-epimerase | |||
| 2375 | DUF2556 family protein | |||
| 2380 | M | M.PmeBin470ORFAP (99% identity) | ATGCAT | M.Eco25DNORF2380P |
| 2385 | DNA-binding transcriptional regulator Fis | |||
| 9720 | phosphohydrolase | |||
| 9725 | M | M.SflC32DcmP (100% identity) | CCWGG | M.Eco25DNDcmP |
| 9730 | V | V.EcosC25DcmP (100% identity) | V.Eco25DNDcmP | |
| 9735 | drug/metabolite exporter YedA | |||
| 21145 | McrC family protein | |||
| 21150 | R | EcosS9ORF2810P (100% identity) | GGTCTC | Eco25DNORF21155P |
| 21155 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.Eco25DNORF21155P |
| 21160 | M | M2.EcosEC4ORF20110P (100% identity) | GGTCTC | M2.Eco25DNORF21155P |
| 21165 | helix-turn-helix domain-containing protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 21135 | IS3-like element ISEc52 family transposase | |||
| 21140 | R | EcosS9McrBP (94% identity) | Eco25DNMcrBP | |
| 21145 | R | EcosS9McrCP (100% identity) | Eco25DNMcrCP | |
| 21150 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 13890 | NinE family protein | |||
| 13895 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.Eco25DNORF13895P |
| 13900 | recombination protein NinB | |||