Escherichia coli O25b:H4-ST131 |
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Putative Escherichia coli O25b:H4-ST131 RM systems
Ref: Jovanovic,O. and Shang,C. unpublished
REBASE ref # 31496
| Sequence length: | GenBank #: | |
| Chromosome: | 5,058,045 bp | CP063774 |
| plasmid pHK02-1: | 58,468 bp | CP063775 |
REBASE acronym: EcoT131
Org_num: 45568
All begin INT78_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 16540 | endoribonuclease SymE | |||
| 16545 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoT131ORF16555P |
| 16550 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoT131ORF16555P |
| ??? | M | M.EcoZLWTORF20795P (100% identity) | RTACNNNNGTG | M.EcoT131ORF16555P |
| 16560 | restriction endonuclease | |||
| 18685 | ash family protein | |||
| 18690 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoT131ORF18695P |
| 18695 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoT131ORF18695P |
| 18700 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoT131ORF18695P |
| 18705 | type IV toxin-antitoxin system AbiEi family | |||
| plasmid pHK02-1 | ||||
| 24770 | IS1 family transposase | |||
| 24775 | M | M.SenceORFJP (95% identity) | M.EcoT131ORF24775P | |
| 24780 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3405 | drug/metabolite exporter YedA | |||
| 3410 | V | V.SflC32DcmP (74% identity) | V.EcoT131DcmP | |
| 3415 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoT131DcmP |
| 3420 | phosphohydrolase | |||
| 10500 | DNA-binding transcriptional regulator Fis | |||
| 10505 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoT131ORF10505P |
| 10510 | DUF2556 family protein | |||
| 11100 | ribulose-phosphate 3-epimerase | |||
| 11105 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoT131DamP |
| 11110 | cell division protein DamX | |||
| 16195 | helix-turn-helix domain-containing protein | |||
| 16200 | M | M2.EcosEC4ORF20110P (100% identity) | GGTCTC | M1.EcoT131ORF16200P |
| 16205 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoT131ORF16200P |
| 16210 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoT131ORF16200P |
| 16215 | McrC family protein | |||
| 18055 | 103 aa hypothetical protein | |||
| 18060 | M | M.Ssp14523ORF22990P (100% identity) | M.EcoT131ORF18060P | |
| 18065 | 73 aa hypothetical protein | |||
| 22160 | 71 aa hypothetical protein | |||
| 22165 | M | M.KpnYN1ORFGP (89% identity) | M.EcoT131ORF22165P | |
| 22170 | helix-turn-helix transcriptional regulator | |||
| 24425 | TrmB family transcriptional regulator | |||
| 24430 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoT131ORF24430P |
| 24445 | DUF3927 family protein | |||
| plasmid pHK02-1 | ||||
| 24710 | 73 aa hypothetical protein | |||
| 24715 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoT131ORF24715P |
| 24720 | 102 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 16210 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 16215 | R | EcosS9McrCP (100% identity) | EcoT131McrCP | |
| 16220 | R | EcosS3McrBP (100% identity) | EcoT131McrBP | |
| 16225 | glycosyltransferase family 2 protein | |||