Salmonella enterica subsp. enterica serovar Dublin 18SC12VL05-S4 |
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Putative Salmonella enterica subsp. enterica serovar Dublin 18SC12VL05-S4 RM systems
Ref: Tate,H. et al. unpublished
REBASE ref # 31494
Complete sequence: 4,845,459 bp
GenBank #: CP063754
REBASE acronym: Sen05S4
Org_num: 45704
All begin IO769_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 20485 | restriction endonuclease | |||
| ??? | M | M.SenD7795ORFGP (100% identity) | GGYANNNNNNTCG | M.Sen05S4ORF20490P |
| 20495 | S | S1.Ssp3CORF11555P (100% identity) | GGYANNNNNNTCG | S.Sen05S4ORF20490P |
| 20500 | R | Ssp3CORF11555P (100% identity) | GGYANNNNNNTCG | Sen05S4ORF20490P |
| 20505 | DUF91 domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1955 | cell division protein DamX | |||
| 1960 | M | M.StyTDamP (100% identity) | GATC | M.Sen05S4DamP |
| 1965 | ribulose-phosphate 3-epimerase | |||
| 2445 | DUF2556 family protein | |||
| 2450 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen05S4ORF2450P |
| 2455 | DNA-binding transcriptional regulator Fis | |||
| 5620 | TraR/DksA family transcriptional regulator | |||
| 5625 | M | M.Ssp8103ORF5415P (100% identity) | GATC | M.Sen05S4ORF5625P |
| 5630 | replication endonuclease | |||
| 9205 | 249 aa hypothetical protein | |||
| 9210 | M | M.Ssp3CORF22905P (100% identity) | M.Sen05S4ORF9210P | |
| 9215 | ead/Ea22-like family protein | |||
| 9280 | PerC family transcriptional regulator | |||
| ??? | M | M.Sen59898ORF9120P (100% identity) | M.Sen05S4ORF9285P | |
| 9290 | RusA family crossover junction | |||
| 14145 | drug/metabolite exporter YedA | |||
| 14150 | V | V.StyUK1DcmP (100% identity) | V.Sen05S4DcmP | |
| 14155 | M | M.Ssp3CDcmP (100% identity) | CCWGG | M.Sen05S4DcmP |
| 14160 | phosphohydrolase | |||
| 14935 | DUF550 domain-containing protein | |||
| 14940 | M | M.Ssp3CORF17125P (100% identity) | M.Sen05S4ORF14940P | |
| 14945 | ead/Ea22-like family protein | |||
| 20615 | YebC/PmpR family DNA-binding transcriptional | |||
| 20620 | R | SspSAL045ORF19515P (100% identity) | Sen05S4ORF20620P | |
| 20625 | IS3 family transposase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 18270 | 33 aa hypothetical protein | |||
| 18275 | R | Ssp3CORF13760P (100% identity) | CAGAG | Sen05S4ORF18280P |
| 18280 | M | M.StyUK1I (100% identity) | CAGAG | M.Sen05S4ORF18280P |
| 18285 | MFS transporter | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 20480 | N-6 DNA methylase | |||
| 20485 | R | Ssp3CMrrP (100% identity) | Sen05S4MrrP | |
| 20490 | type I restriction-modification system subunit | |||