Rhodococcus pyridinivorans 5Ap |
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Putative Rhodococcus pyridinivorans 5Ap RM systems
Ref: Akhremchuk,A.E. et al. unpublished
REBASE ref # 31505
| Sequence length: | GenBank #: | |
| Chromosome: | 5,220,735 bp | CP063450 |
| plasmid pNAPH: | 207,815 bp | CP063451 |
| plasmid pRh5Ap-243: | 243,288 bp | CP063452 |
| plasmid pSID: | 250,428 bp | CP063453 |
REBASE acronym: Rpy5Ap
Org_num: 45586
All begin INP59_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pSID | ||||
| 26945 | 116 aa hypothetical protein | |||
| 26950 | M | M.RruP25ORFHP (94% identity) | M.Rpy5ApORF26950P | |
| 26955 | S | S.Ssp1431ORF7070P (50% identity) | S.Rpy5ApORF26950P | |
| 26960 | R | Rru4ORFHP (93% identity) | Rpy5ApORF26950P | |
| 26965 | integration host factor | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1260 | acyl-CoA dehydrogenase family protein | |||
| 1265 | V | V.RpyCP8ORF1365P (100% identity) | V.Rpy5ApORF1270P | |
| 1270 | M | M.RspXY12ORF1245P (100% identity) | CTCGAG | M.Rpy5ApORF1270P |
| 1275 | 507 aa hypothetical protein CFC35_33630 | |||
| 7415 | 61 aa hypothetical protein | |||
| 7420 | RM | RpyCP8ORF7125P (100% identity) | Rpy5ApORF7420P | |
| 7425 | DEAD/DEAH box helicase | |||
| plasmid pNAPH | ||||
| 25080 | ISL3-like element ISPfr2 family transposase | |||
| 25085 | M | M.RspENV425ORF2675P (73% identity) | M.Rpy5ApORF25085P | |
| 25090 | R | RpyGZ01ORF24745P (96% identity) | Rpy5ApORF25085P | |
| 25095 | IS1380 family transposase | |||
| plasmid pRh5Ap-243 | ||||
| 26335 | 114 aa hypothetical protein | |||
| 26340 | R | Got1600ORF7405P (68% identity) | Rpy5ApORF26340P | |
| 26345 | DNA cytosine methyltransferase | |||
| 26340 | 358 aa hypothetical protein | |||
| 26345 | M | M.MavW9ORF16805P (67% identity) | M.Rpy5ApORF26345P | |
| 26350 | IS21 family transposase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6370 | carotenoid oxygenase family protein | |||
| 6375 | R | RspXY12MrrP (100% identity) | Rpy5ApMrrP | |
| 6380 | DUF1906 domain-containing protein | |||