Campylobacter upsaliensis D6824 |
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Putative Campylobacter upsaliensis D6824 RM systems
Ref: Lane,C. unpublished
REBASE ref # 31448
Complete sequence: 1,582,208 bp
GenBank #: CP063083
REBASE acronym: Cup6824
Org_num: 45422
All begin HW254_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1345 | 16S rRNA (guanine(527)-N(7))-methyltransferase | |||
| 1350 | R | Cup736ORF3125P (99% identity) | Cup6824ORF1355P | |
| 1355 | M | M.Cup11840ORF327P (99% identity) | M.Cup6824ORF1355P | |
| 1360 | 90 aa hypothetical protein | |||
| 1365 | type II toxin-antitoxin system RelE/ParE family | |||
| 1370 | S | S.Cup11840ORF327P (75% identity) | S.Cup6824ORF1355P | |
| 1375 | MnmA/TRMU family protein | |||
| 5000 | UDP-N-acetylmuramate--L-alanine ligase | |||
| 5005 | R | Cup3940ORF1056P (97% identity) | Cup6824ORF5020P | |
| 5010 | 319 aa hypothetical protein | |||
| 5015 | S | S.Cup736ORF6795P (63% identity) | S.Cup6824ORF5020P | |
| 5020 | M | M.Cup3940ORF1056P (96% identity) | M.Cup6824ORF5020P | |
| 5030 | 190 aa hypothetical protein | |||
| 6440 | 239 aa hypothetical protein | |||
| 6445 | M | M.Cup736ORF30P (97% identity) | M.Cup6824ORF6445P | |
| 6450 | S | S2.Hwi430ORFBP (96% identity) | S1.Cup6824ORF6445P | |
| 6455 | S | S.Cup197059ORF1382P (27% identity) | S2.Cup6824ORF6445P | |
| 6460 | 483 aa hypothetical protein | |||
| 7615 | Tol-Pal system protein TolB | |||
| 7620 | M | M.Cup11840ORF1616P (99% identity) | M.Cup6824ORF7620P | |
| 7625 | R | Cup197059ORF1587P (98% identity) | Cup6824ORF7620P | |
| 7630 | S | S.Cav24591ORF1589P (37% identity) | S1.Cup6824ORF7620P | |
| 7635 | S | S2.Cup197059ORF1587P (97% identity) | S2.Cup6824ORF7620P | |
| 7640 | TonB C-terminal domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2730 | succinyl-diaminopimelate desuccinylase | |||
| 2735 | RM | Cup197059ORF623P (98% identity) | Cup6824ORF2735P | |
| 2740 | 284 aa hypothetical protein | |||
| 3265 | 172 aa hypothetical protein | |||
| ??? | M | M.Hca12410ORF1795P (84% identity) | M.Cup6824ORF3270P | |
| 3280 | R | Che51209ORF832P (94% identity) | Cup6824ORF3270P | |
| 3285 | substrate-binding domain-containing protein | |||
| 3540 | 204 aa hypothetical protein | |||
| 3545 | RM | Cup11840ORF827P (99% identity) | Cup6824ORF3545P | |
| 3550 | restriction endonuclease subunit S | |||
| 4420 | ribbon-helix-helix domain-containing protein | |||
| 4425 | RM | Cup736ORF6195P (99% identity) | Cup6824ORF4425P | |
| 4430 | glycerophosphodiester phosphodiesterase | |||
| 4820 | 471 aa hypothetical protein | |||
| ??? | M | M.Cup11840VI (99% identity) | ACNGT | M.Cup6824ORF4825P |
| 4830 | R | Cup11840VIP (98% identity) | ACNGT | Cup6824ORF4825P |
| 4835 | prephenate dehydratase | |||
| 5885 | 2-amino-4-hydroxy-6- | |||
| 5890 | R | Cup3940ORF1229P (97% identity) | Cup6824ORF5895P | |
| 5895 | M | M.Cup3940ORF1229P (100% identity) | M.Cup6824ORF5895P | |
| 5900 | DNA polymerase I | |||
| 5985 | N-methyl-L-tryptophan oxidase | |||
| ??? | M | M.Cup736ORF7770P (99% identity) | M.Cup6824ORF5990P | |
| 5995 | R | Cup736ORF7770P (99% identity) | Cup6824ORF5990P | |
| 6000 | DUF262 domain-containing protein | |||
| 6085 | ABC transporter ATP-binding protein | |||
| 6090 | M | M.Cup736ORF7870P (100% identity) | M.Cup6824ORF6090P | |
| 6095 | 676 aa hypothetical protein | |||
| 6095 | 676 aa hypothetical protein | |||
| 6100 | M | M.Cup3940ORF1271P (100% identity) | M.Cup6824ORF6100P | |
| 6105 | acetate--CoA ligase | |||
| 6570 | imidazole glycerol phosphate synthase subunit | |||
| 6575 | M | M.Cup11541II (56% identity) | M.Cup6824ORF6575P | |
| 6580 | R | Cup736ORF160P (97% identity) | Cup6824ORF6575P | |
| 6585 | bifunctional | |||
| 7100 | ABC-F family ATP-binding cassette | |||
| ??? | M | M.Cup197059ORF1480P (97% identity) | M.Cup6824ORF7105P | |
| ??? | R | Cup197059ORF1480P (99% identity) | Cup6824ORF7105P | |
| 7115 | 4Fe-4S dicluster domain-containing protein | |||
| 7880 | N-acetyl-gamma-glutamyl-phosphate reductase | |||
| 7885 | R | Cup736ORF1485P (99% identity) | GGATG | Cup6824ORF7890P |
| 7890 | M | M1.Cup11840VIII (99% identity) | GGATG | M1.Cup6824ORF7890P |
| 7895 | M | M2.Cup11840VIII (100% identity) | GGATG | M2.Cup6824ORF7890P |
| 7900 | DNA adenine methylase | |||
| 7895 | DNA adenine methylase | |||
| 7900 | M | M.Cup3940ORF1628P (100% identity) | RAATTY | M.Cup6824ORF7900P |
| 7905 | cell surface protein | |||
| 7940 | type I DNA topoisomerase | |||
| 7945 | M | M.Cup3940ORF1637P (99% identity) | M.Cup6824ORF7945P | |
| 7950 | 194 aa hypothetical protein | |||
| 7955 | glutamate synthase large subunit | |||
| 7960 | M | M.Cup197059ORF1654P (99% identity) | M.Cup6824ORF7960P | |
| 7965 | 210 aa hypothetical protein | |||
| 7970 | R | Cup197059ORF1654P (100% identity) | Cup6824ORF7960P | |
| 7975 | glutamate synthase subunit beta | |||
| 7985 | rRNA pseudouridine synthase | |||
| ??? | M | M1.Cup736ORF1585P (100% identity) | M1.Cup6824ORF7990P | |
| 7995 | M | M2.Cup736ORF1585P (100% identity) | M2.Cup6824ORF7990P | |
| 8000 | R | Cup736ORF1585P (100% identity) | Cup6824ORF7990P | |
| 8005 | crossover junction endodeoxyribonuclease RuvC | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 200 | sodium:proton antiporter | |||
| 205 | R | Cup11840ORF74P (98% identity) | Cup6824ORF210P | |
| 210 | M | M.Cup14913ORF75P (65% identity) | M.Cup6824ORF210P | |
| 215 | SPASM domain-containing protein | |||
| 2305 | 247 aa hypothetical protein | |||
| ??? | R | Cup11840ORF522P (99% identity) | Cup6824ORF2315P | |
| ??? | M | M.Cup29ORFAP (99% identity) | M.Cup6824ORF2315P | |
| 2325 | lipid-A-disaccharide synthase | |||