Ref: Iyer,M.S. et al. unpublished

REBASE ref # 31417

Complete sequence: 2,148,016 bp

GenBank #: CP061485

REBASE acronym: NgoSW0236

Org_num: 45346

 

All begin IBX82_

Type I
ORF Gene Most similar Specificity Name
 
2035 ADP-glyceromanno-heptose 6-epimerase
2040 M M.Ngos1291ORF7750P (100% identity) M.NgoSW0236ORF2040P
2045 DNA damage-inducible protein D
2050 S S1.NgoWSII (100% identity) GCANNNNNNNNTGC S1.NgoSW0236ORF2040P
2055 S S2.NgoWSII (100% identity) GCANNNNNNNNTGC S2.NgoSW0236ORF2040P
2060 R NgoSW0259ORF2065P (99% identity) NgoSW0236ORF2040P
2065 ATP-dependent Clp protease ATP-binding subunit
 
3535 replication-associated recombination protein A
3540 R NgoFQ35ORF5510P (99% identity) GAGNNNNNTAC NgoSW0236ORF3565P
3545 hydroxyacid dehydrogenase
3550 S S.NgoWSI (100% identity) GAGNNNNNTAC S.NgoSW0236ORF3565P
3555 186 aa hypothetical protein
3560 280 aa hypothetical protein
3565 M M.NgoNG250ORF4770P (99% identity) GAGNNNNNTAC M.NgoSW0236ORF3565P
3570 ABC transporter
Type II
ORF Gene Most similar Specificity Name
 
30 leucine--tRNA ligase
??? R NgoSW0274ORF40P (100% identity) GATC NgoSW0236ORF40P
45 site-specific DNA-methyltransferase
 
40 restriction endonuclease
??? M M.NgoSW0274ORF45P (99% identity) M.NgoSW0236ORF45P
55 184 aa hypothetical protein
 
1510 phenylalanine--tRNA ligase subunit alpha
1515 V V.NgoSW0032ORF1550P (100% identity) V.NgoSW0236ORF1520P
??? M M.NgoWSORF391P (100% identity) M.NgoSW0236ORF1520P
1530 R Npo18661ORFHP (100% identity) NgoSW0236ORF1520P
1535 phenylalanine--tRNA ligase subunit beta
 
1835 uroporphyrinogen decarboxylase
1840 H H.Ngos1291ORF7560P (100% identity) H.NgoSW0236ORF1850P
1845 R Ngos1291ORF7560P (100% identity) GCSGC NgoSW0236ORF1850P
1850 M M.NgoWSORF459P (99% identity) GCSGC M1.NgoSW0236ORF1850P
??? M M2.NgoSW0259ORF1875P (100% identity) M2.NgoSW0236ORF1850P
1855 DNA repair protein RadA
 
3425 3-isopropylmalate dehydrogenase
3430 R NgoWSORF784P (100% identity) GGNNCC NgoSW0236ORF3435P
3435 M M.NmeM395ORFKP (100% identity) GGNNCC M.NgoSW0236ORF3435P
3440 3-isopropylmalate dehydratase small subunit
 
4400 anthranilate synthase component I
4405 M M.NgoSW0032ORF4420P (100% identity) GCCGGC M.NgoSW0236ORF4405P
4410 R Ngos1291ORF10080P (100% identity) GCCGGC NgoSW0236ORF4405P
4415 5-(carboxyamino)imidazole ribonucleotide
 
5845 replication initiation factor domain-containing
5850 V V.Ngos1291ORF65P (100% identity) V.NgoSW0236ORF5860P
5855 R Ngos1291ORF65P (100% identity) NgoSW0236ORF5860P
??? M M.Ngos1291ORF65P (100% identity) M.NgoSW0236ORF5860P
5870 type IV pilin protein
 
6045 excinuclease ABC subunit UvrA
6050 R Ngos1291ORF260P (100% identity) CCGCGG NgoSW0236ORF6055P
6055 M M.Ngos1291ORF260P (100% identity) CCGCGG M.NgoSW0236ORF6055P
6060 transposase
 
9070 FUSC family protein
9075 R NgoFQ48ORF12300P (100% identity) GGCC NgoSW0236ORF9080P
9080 M M.Ngos1291ORF3515P (100% identity) GGCC M.NgoSW0236ORF9080P
9085 ribosome recycling factor
 
9620 93 aa hypothetical protein
9625 R NgoWSIIIP (99% identity) GGTGA NgoSW0236ORF9630P
9630 M M1.NgoSW0259ORF9605P (100% identity) GGTGA M1.NgoSW0236ORF9630P
9635 M M1.NgoWSIII (100% identity) GGTGA M2.NgoSW0236ORF9630P
9640 RNA-binding transcriptional accessory protein
 
10160 GTPase ObgE
10165 M M.Ngos1291ORF4640P (100% identity) RGCGCY M.NgoSW0236ORF10165P
10170 R Ngos1291ORF4640P (100% identity) RGCGCY NgoSW0236ORF10165P
10175 cysteine--tRNA ligase
Type III
ORF Gene Most similar Specificity Name
 
2760 peptidyl-prolyl cis-trans isomerase
2765 M M.NgoSW0032ORF2780P (81% identity) M.NgoSW0236ORF2765P
??? R NgoWSORF647P (32% identity) NgoSW0236ORF2765P
2775 tRNA 2-thiocytidine(32) synthetase TtcA
 
3230 alpha-hydroxy-acid oxidizing protein
3235 R NgoWFORF680P (99% identity) NgoSW0236ORF3240P
??? M M.NgoSH204ORFKP (99% identity) M.NgoSW0236ORF3240P
3255 tRNA pseudouridine(55) synthase TruB