Neisseria gonorrhoeae SW0223 |
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Putative Neisseria gonorrhoeae SW0223 RM systems
Ref: Iyer,M.S. et al. unpublished
REBASE ref # 31417
Complete sequence: 2,152,289 bp
GenBank #: CP061492
REBASE acronym: NgoSW0223
Org_num: 45345
All begin IBX81_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2070 | ADP-glyceromanno-heptose 6-epimerase | |||
| 2075 | M | M.Ngos1291ORF7750P (100% identity) | M.NgoSW0223ORF2075P | |
| 2080 | DNA damage-inducible protein D | |||
| 2085 | S | S1.NgoWSII (100% identity) | GCANNNNNNNNTGC | S1.NgoSW0223ORF2075P |
| 2090 | S | S2.NgoSW0274ORF2075P (100% identity) | GCANNNNNNNNTGC | S2.NgoSW0223ORF2075P |
| 2095 | R | NgoWSIIP (99% identity) | NgoSW0223ORF2075P | |
| 2100 | ATP-dependent Clp protease ATP-binding subunit | |||
| 3545 | replication-associated recombination protein A | |||
| 3550 | R | NgoMS11ORF6305P (99% identity) | GAGNNNNNTAC | NgoSW0223ORF3575P |
| 3555 | hydroxyacid dehydrogenase | |||
| 3560 | S | S.NgoWSI (100% identity) | GAGNNNNNTAC | S.NgoSW0223ORF3575P |
| 3565 | 186 aa hypothetical protein | |||
| 3570 | 280 aa hypothetical protein | |||
| 3575 | M | M.Ngos1291I (100% identity) | GAGNNNNNTAC | M.NgoSW0223ORF3575P |
| 3580 | ABC transporter | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 30 | leucine--tRNA ligase | |||
| 35 | R | NgoSW0274ORF40P (85% identity) | NgoSW0223ORF35P | |
| 40 | restriction endonuclease | |||
| 40 | restriction endonuclease | |||
| 45 | M | M.Ngos1291ORF5755P (100% identity) | M.NgoSW0223ORF45P | |
| 50 | 184 aa hypothetical protein | |||
| 1540 | phenylalanine--tRNA ligase subunit alpha | |||
| 1545 | V | V.NgoWSORF391P (100% identity) | V.NgoSW0223ORF1550P | |
| ??? | M | M.NgoWSORF391P (100% identity) | M.NgoSW0223ORF1550P | |
| 1560 | R | NgoWSORF391P (100% identity) | NgoSW0223ORF1550P | |
| 1565 | phenylalanine--tRNA ligase subunit beta | |||
| 1835 | IS1595 family transposase | |||
| 1840 | RM | NgoSW0259ORF1830P (100% identity) | GACNNNNNTGA | NgoSW0223ORF1840P |
| 1845 | S | S.Ngos1291ORF7515P (100% identity) | GACNNNNNTGA | S.NgoSW0223ORF1840P |
| 1850 | 140 aa hypothetical protein | |||
| 1870 | uroporphyrinogen decarboxylase | |||
| 1875 | H | H.Ngos1291ORF7560P (100% identity) | H.NgoSW0223ORF1885P | |
| 1880 | R | Ngos1291ORF7560P (100% identity) | GCSGC | NgoSW0223ORF1885P |
| 1885 | M | M.Ngos1291ORF7560P (100% identity) | GCSGC | M.NgoSW0223ORF1885P |
| 1890 | DNA repair protein RadA | |||
| 3435 | 3-isopropylmalate dehydrogenase | |||
| 3440 | R | NgoWSORF784P (100% identity) | GGNNCC | NgoSW0223ORF3445P |
| 3445 | M | M.NmeMBW2ORFJP (100% identity) | GGNNCC | M.NgoSW0223ORF3445P |
| 3450 | 3-isopropylmalate dehydratase small subunit | |||
| 4415 | anthranilate synthase component I | |||
| 4420 | M | M.NgoWLORF1156P (100% identity) | GCCGGC | M.NgoSW0223ORF4420P |
| 4425 | R | Ngos1291ORF10080P (100% identity) | GCCGGC | NgoSW0223ORF4420P |
| 4430 | 5-(carboxyamino)imidazole ribonucleotide | |||
| 5805 | replication initiation factor domain-containing | |||
| 5810 | V | V.Ngos1291ORF65P (100% identity) | V.NgoSW0223ORF5820P | |
| 5815 | R | Ngos1291ORF65P (100% identity) | NgoSW0223ORF5820P | |
| ??? | M | M.Ngos1291ORF65P (100% identity) | M.NgoSW0223ORF5820P | |
| 5830 | type IV pilin protein | |||
| 6005 | excinuclease ABC subunit UvrA | |||
| 6010 | R | Ngos1291ORF260P (99% identity) | CCGCGG | NgoSW0223ORF6015P |
| 6015 | M | M.Ngos1291ORF260P (100% identity) | CCGCGG | M.NgoSW0223ORF6015P |
| 6020 | transposase | |||
| 9055 | FUSC family protein | |||
| 9060 | R | NgoSW0032ORF9090P (100% identity) | GGCC | NgoSW0223ORF9065P |
| 9065 | M | M.NgoSW0274ORF9100P (100% identity) | GGCC | M.NgoSW0223ORF9065P |
| 9070 | ribosome recycling factor | |||
| 9610 | 93 aa hypothetical protein | |||
| 9615 | R | NgoWSIIIP (100% identity) | GGTGA | NgoSW0223ORF9620P |
| 9620 | M | M1.NgoSW0259ORF9605P (100% identity) | GGTGA | M1.NgoSW0223ORF9620P |
| 9625 | M | M2.Ngos1291II (100% identity) | GGTGA | M2.NgoSW0223ORF9620P |
| 9630 | RNA-binding transcriptional accessory protein | |||
| 10150 | GTPase ObgE | |||
| 10155 | M | M.Ngos1291ORF4640P (100% identity) | RGCGCY | M.NgoSW0223ORF10155P |
| 10160 | R | Ngos1291ORF4640P (99% identity) | RGCGCY | NgoSW0223ORF10155P |
| 10165 | cysteine--tRNA ligase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2785 | peptidyl-prolyl cis-trans isomerase | |||
| 2790 | M | M.Ngo10531ORF5590P (96% identity) | CCACC | M.NgoSW0223ORF2790P |
| 2795 | R | Ngos1291ORF8455P (99% identity) | CCACC | NgoSW0223ORF2790P |
| 2800 | tRNA 2-thiocytidine(32) synthetase TtcA | |||
| 3250 | alpha-hydroxy-acid oxidizing protein | |||
| 3255 | R | NgoSW0011ORF3260P (100% identity) | GCAGA | NgoSW0223ORF3260P |
| 3260 | M | M.NgoSW0011ORF3260P (100% identity) | GCAGA | M.NgoSW0223ORF3260P |
| 3265 | tRNA pseudouridine(55) synthase TruB | |||