Ref: Iyer,M.S. et al. unpublished

REBASE ref # 31417

Complete sequence: 2,153,514 bp

GenBank #: CP061486

REBASE acronym: NgoSW0015

Org_num: 45342

 

All begin IBX80_

Type I
ORF Gene Most similar Specificity Name
 
2070 ADP-glyceromanno-heptose 6-epimerase
2075 M M.Ngos1291ORF7750P (99% identity) M.NgoSW0015ORF2075P
2080 DNA damage-inducible protein D
2085 S S1.NgoWSII (100% identity) GCANNNNNNNNTGC S1.NgoSW0015ORF2075P
2090 S S2.NgoSW0274ORF2075P (100% identity) GCANNNNNNNNTGC S2.NgoSW0015ORF2075P
2095 R NgoSW0032ORF2070P (99% identity) NgoSW0015ORF2075P
2100 ATP-dependent Clp protease ATP-binding subunit
 
3545 replication-associated recombination protein A
3550 R Ngos1291ORF9245P (100% identity) GAGNNNNNTAC NgoSW0015ORF3575P
3555 hydroxyacid dehydrogenase
3560 S S.NgoSW0011ORF3580P (100% identity) GAGNNNNNTAC S.NgoSW0015ORF3575P
3565 186 aa hypothetical protein
3570 280 aa hypothetical protein
3575 M M.NgoSW0011ORF3580P (100% identity) GAGNNNNNTAC M.NgoSW0015ORF3575P
3580 ABC transporter
Type II
ORF Gene Most similar Specificity Name
 
30 leucine--tRNA ligase
??? R NgoSW0274ORF40P (100% identity) GATC NgoSW0015ORF40P
45 site-specific DNA-methyltransferase
 
40 restriction endonuclease
??? M M.NgoSW0018ORF45P (100% identity) M.NgoSW0015ORF45P
55 184 aa hypothetical protein
 
1545 phenylalanine--tRNA ligase subunit alpha
1550 V V.NgoWSORF391P (100% identity) V.NgoSW0015ORF1555P
1555 M M.NgoSW0274ORF1550P (100% identity) M.NgoSW0015ORF1555P
1560 81 aa hypothetical protein
1565 R NgoSW0011ORF1560P (100% identity) NgoSW0015ORF1555P
1570 phenylalanine--tRNA ligase subunit beta
 
1840 SAM-dependent DNA methyltransferase
1845 S S.NgoWSORF450P (100% identity) GACNNNNNTGA S.NgoSW0015ORF1845P
1850 140 aa hypothetical protein
 
1870 uroporphyrinogen decarboxylase
1875 H H.Ngos1291ORF7560P (100% identity) H.NgoSW0015ORF1885P
1880 R Ngos1291ORF7560P (100% identity) GCSGC NgoSW0015ORF1885P
1885 M M.Ngos1291ORF7560P (100% identity) GCSGC M1.NgoSW0015ORF1885P
??? M M2.NgoSW0259ORF1875P (100% identity) M2.NgoSW0015ORF1885P
1890 DNA repair protein RadA
 
3435 3-isopropylmalate dehydrogenase
3440 R NgoSW0274ORF3455P (100% identity) GGNNCC NgoSW0015ORF3445P
3445 M M.NmeM395ORFKP (100% identity) GGNNCC M.NgoSW0015ORF3445P
3450 3-isopropylmalate dehydratase small subunit
 
4405 anthranilate synthase component I
4410 M M.NgoWLORF1156P (100% identity) GCCGGC M.NgoSW0015ORF4410P
4415 R Ngos1291ORF10080P (100% identity) GCCGGC NgoSW0015ORF4410P
4420 5-(carboxyamino)imidazole ribonucleotide
 
5835 replication initiation factor domain-containing
5840 V V.Ngos1291ORF65P (100% identity) V.NgoSW0015ORF5850P
5845 R Ngos1291ORF65P (100% identity) NgoSW0015ORF5850P
??? M M.Ngos1291ORF65P (100% identity) M.NgoSW0015ORF5850P
5860 type IV pilin protein
 
6035 excinuclease ABC subunit UvrA
6040 R NgoSW0011ORF6055P (100% identity) CCGCGG NgoSW0015ORF6045P
6045 M M.Ngos1291ORF260P (100% identity) CCGCGG M.NgoSW0015ORF6045P
6050 transposase
 
9065 FUSC family protein
9070 R NgoSW0011ORF9105P (100% identity) GGCC NgoSW0015ORF9075P
9075 M M.Ngos1291ORF3515P (100% identity) GGCC M.NgoSW0015ORF9075P
9080 ribosome recycling factor
 
9620 93 aa hypothetical protein
9625 R NgoWSIIIP (100% identity) GGTGA NgoSW0015ORF9630P
9630 M M1.NgoSW0018ORF9660P (100% identity) GGTGA M1.NgoSW0015ORF9630P
9635 M M1.NgoWSIII (100% identity) GGTGA M2.NgoSW0015ORF9630P
9640 RNA-binding transcriptional accessory protein
 
10160 GTPase ObgE
10165 M M.NgoSW0018ORF10195P (100% identity) RGCGCY M.NgoSW0015ORF10165P
10170 R Ngos1291ORF4640P (100% identity) RGCGCY NgoSW0015ORF10165P
10175 cysteine--tRNA ligase
Type III
ORF Gene Most similar Specificity Name
 
2785 peptidyl-prolyl cis-trans isomerase
2790 M M.NgoSW0032ORF2780P (100% identity) CCACC M.NgoSW0015ORF2790P
2795 R NgoWPIIP (100% identity) CCACC NgoSW0015ORF2790P
2800 tRNA 2-thiocytidine(32) synthetase TtcA
 
3245 alpha-hydroxy-acid oxidizing protein
3250 R NgoSW0005ORF3275P (100% identity) GCAGA NgoSW0015ORF3255P
3255 M M.NgoAXII (100% identity) GCAGA M.NgoSW0015ORF3255P
3260 tRNA pseudouridine(55) synthase TruB