Neisseria gonorrhoeae SW0032 |
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Putative Neisseria gonorrhoeae SW0032 RM systems
Ref: Iyer,M.S. et al. unpublished
REBASE ref # 31417
Complete sequence: 2,151,426 bp
GenBank #: CP061487
REBASE acronym: NgoSW0032
Org_num: 45344
All begin IBX79_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2065 | ADP-glyceromanno-heptose 6-epimerase | |||
| 2070 | M | M.NgoSW0005ORF2075P (99% identity) | M.NgoSW0032ORF2070P | |
| 2075 | DNA damage-inducible protein D | |||
| 2080 | S | S1.NgoWSII (100% identity) | GCANNNNNNNNTGC | S1.NgoSW0032ORF2070P |
| 2085 | S | S2.NgoSW0274ORF2075P (100% identity) | GCANNNNNNNNTGC | S2.NgoSW0032ORF2070P |
| 2090 | R | Ngos1291ORF7750P (99% identity) | NgoSW0032ORF2070P | |
| 2095 | ATP-dependent Clp protease ATP-binding subunit | |||
| 3545 | replication-associated recombination protein A | |||
| 3550 | R | Ngos1291IP (100% identity) | GAGNNNNNTAC | NgoSW0032ORF3575P |
| 3555 | hydroxyacid dehydrogenase | |||
| 3560 | S | S.NgoSW0005ORF3595P (100% identity) | GAGNNNNNTAC | S.NgoSW0032ORF3575P |
| 3565 | 186 aa hypothetical protein | |||
| 3570 | 280 aa hypothetical protein | |||
| 3575 | M | M.Ngos1291I (99% identity) | GAGNNNNNTAC | M.NgoSW0032ORF3575P |
| 3580 | ABC transporter | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 30 | leucine--tRNA ligase | |||
| ??? | R | NgoSW0274ORF40P (100% identity) | GATC | NgoSW0032ORF40P |
| 45 | site-specific DNA-methyltransferase | |||
| 40 | restriction endonuclease | |||
| 45 | M | M.Ngos1291ORF5755P (100% identity) | M.NgoSW0032ORF45P | |
| 50 | 184 aa hypothetical protein | |||
| 1540 | phenylalanine--tRNA ligase subunit alpha | |||
| 1545 | V | V.NgoSW0236ORF1520P (100% identity) | V.NgoSW0032ORF1550P | |
| ??? | M | M.NgoWSORF391P (100% identity) | M.NgoSW0032ORF1550P | |
| 1560 | R | NgoSW0274ORF1550P (100% identity) | NgoSW0032ORF1550P | |
| 1565 | phenylalanine--tRNA ligase subunit beta | |||
| 1865 | uroporphyrinogen decarboxylase | |||
| 1870 | H | H.NgoSW0018ORF1895P (99% identity) | H.NgoSW0032ORF1880P | |
| 1875 | R | Ngos1291ORF7560P (100% identity) | GCSGC | NgoSW0032ORF1880P |
| 1880 | M | M.NgoPID1ORF1005P (100% identity) | GCSGC | M.NgoSW0032ORF1880P |
| 1885 | DNA repair protein RadA | |||
| 3430 | 3-isopropylmalate dehydrogenase | |||
| 3435 | R | NgoSW0274ORF3455P (100% identity) | GGNNCC | NgoSW0032ORF3440P |
| 3440 | M | M.NmeMBW2ORFJP (100% identity) | GGNNCC | M.NgoSW0032ORF3440P |
| 3445 | 3-isopropylmalate dehydratase small subunit | |||
| 4415 | anthranilate synthase component I | |||
| 4420 | M | M.NgoSW0236ORF4405P (100% identity) | GCCGGC | M.NgoSW0032ORF4420P |
| 4425 | R | Ngos1291ORF10080P (100% identity) | GCCGGC | NgoSW0032ORF4420P |
| 4430 | 5-(carboxyamino)imidazole ribonucleotide | |||
| 5855 | replication initiation factor domain-containing | |||
| 5860 | V | V.Ngos1291ORF65P (100% identity) | V.NgoSW0032ORF5870P | |
| 5865 | R | Ngos1291ORF65P (100% identity) | NgoSW0032ORF5870P | |
| ??? | M | M.Ngos1291ORF65P (100% identity) | M.NgoSW0032ORF5870P | |
| 5880 | type IV pilin protein | |||
| 6055 | excinuclease ABC subunit UvrA | |||
| 6060 | R | Ngos1291ORF260P (100% identity) | CCGCGG | NgoSW0032ORF6065P |
| 6065 | M | M.Ngos1291ORF260P (95% identity) | CCGCGG | M.NgoSW0032ORF6065P |
| 6070 | transposase | |||
| 9080 | FUSC family protein | |||
| 9085 | R | NgoSW0223ORF9065P (100% identity) | GGCC | NgoSW0032ORF9090P |
| 9090 | M | M.NgoSW0274ORF9100P (100% identity) | GGCC | M.NgoSW0032ORF9090P |
| 9095 | ribosome recycling factor | |||
| 9635 | 93 aa hypothetical protein | |||
| 9640 | R | Ngos1291IIP (99% identity) | GGTGA | NgoSW0032ORF9645P |
| 9645 | M | M1.NgoSW0259ORF9605P (100% identity) | GGTGA | M1.NgoSW0032ORF9645P |
| 9650 | M | M2.Ngos1291II (100% identity) | GGTGA | M2.NgoSW0032ORF9645P |
| 9655 | RNA-binding transcriptional accessory protein | |||
| 10175 | GTPase ObgE | |||
| 10180 | M | M.Ngos1291ORF4640P (100% identity) | RGCGCY | M.NgoSW0032ORF10180P |
| 10185 | R | Ngos1291ORF4640P (100% identity) | RGCGCY | NgoSW0032ORF10180P |
| 10190 | cysteine--tRNA ligase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2775 | peptidyl-prolyl cis-trans isomerase | |||
| 2780 | M | M.NgoSW0015ORF2790P (100% identity) | CCACC | M.NgoSW0032ORF2780P |
| 2785 | R | NgoSW0011ORF2790P (99% identity) | CCACC | NgoSW0032ORF2780P |
| 2790 | tRNA 2-thiocytidine(32) synthetase TtcA | |||
| 3235 | alpha-hydroxy-acid oxidizing protein | |||
| 3240 | R | NgoSW0223ORF3260P (99% identity) | NgoSW0032ORF3245P | |
| ??? | M | M.Ngo10819ORF5195P (78% identity) | M.NgoSW0032ORF3245P | |
| 3255 | tRNA pseudouridine(55) synthase TruB | |||