Putative Neisseria gonorrhoeae SW0005 RM systems
Ref: Iyer,M.S. et al. unpublished
REBASE ref # 31417
Complete sequence: 2,152,607 bp
GenBank #: CP061490
REBASE acronym: NgoSW0005
Org_num: 45340
All begin IBX76_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
2070 | ADP-glyceromanno-heptose 6-epimerase | |||
2075 | M | M.NgoFA19ORF148P (99% identity) | M.NgoSW0005ORF2075P | |
2080 | DNA damage-inducible protein D | |||
2085 | S | S1.NgoWSII (100% identity) | GCANNNNNNNNTGC | S1.NgoSW0005ORF2075P |
2090 | S | S2.NgoSW0274ORF2075P (100% identity) | GCANNNNNNNNTGC | S2.NgoSW0005ORF2075P |
2095 | R | NgoSW0032ORF2070P (99% identity) | NgoSW0005ORF2075P | |
2100 | ATP-dependent Clp protease ATP-binding subunit | |||
3565 | replication-associated recombination protein A | |||
3570 | R | Ngos1291IP (100% identity) | GAGNNNNNTAC | NgoSW0005ORF3595P |
3575 | hydroxyacid dehydrogenase | |||
3580 | S | S.NgoSW0032ORF3575P (100% identity) | GAGNNNNNTAC | S.NgoSW0005ORF3595P |
3585 | 186 aa hypothetical protein | |||
3590 | 280 aa hypothetical protein | |||
3595 | M | M.Ngos1291I (100% identity) | GAGNNNNNTAC | M.NgoSW0005ORF3595P |
3600 | ABC transporter | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
30 | leucine--tRNA ligase | |||
35 | R | NgoSW0274ORF40P (85% identity) | NgoSW0005ORF40P | |
40 | restriction endonuclease | |||
40 | restriction endonuclease | |||
??? | M | M.Ngo34769ORF45P (77% identity) | M.NgoSW0005ORF45P | |
55 | 184 aa hypothetical protein | |||
1550 | phenylalanine--tRNA ligase subunit alpha | |||
1555 | V | V.NgoWSORF391P (100% identity) | V.NgoSW0005ORF1560P | |
??? | M | M.NgoWSORF391P (100% identity) | M.NgoSW0005ORF1560P | |
1565 | R | NgoSW0274ORF1550P (100% identity) | NgoSW0005ORF1560P | |
1570 | phenylalanine--tRNA ligase subunit beta | |||
1835 | IS1595 family transposase | |||
1840 | RM | Ngos1291ORF7515P (100% identity) | GACNNNNNTGA | NgoSW0005ORF1840P |
1845 | S | S.Ngos1291ORF7515P (100% identity) | GACNNNNNTGA | S.NgoSW0005ORF1840P |
1850 | 140 aa hypothetical protein | |||
1870 | uroporphyrinogen decarboxylase | |||
1875 | H | H.Ngos1291ORF7560P (100% identity) | H.NgoSW0005ORF1885P | |
1880 | R | Ngos1291ORF7560P (100% identity) | GCSGC | NgoSW0005ORF1885P |
1885 | M | M.NgoSW0018ORF1895P (100% identity) | GCSGC | M.NgoSW0005ORF1885P |
1890 | DNA repair protein RadA | |||
3450 | 3-isopropylmalate dehydrogenase | |||
3455 | R | NgoSW0274ORF3455P (100% identity) | GGNNCC | NgoSW0005ORF3460P |
3460 | M | M.NmeMBW2ORFJP (100% identity) | GGNNCC | M.NgoSW0005ORF3460P |
3465 | 3-isopropylmalate dehydratase small subunit | |||
4430 | anthranilate synthase component I | |||
4435 | M | M.NgoSW0236ORF4405P (100% identity) | GCCGGC | M.NgoSW0005ORF4435P |
4440 | R | Ngos1291ORF10080P (100% identity) | GCCGGC | NgoSW0005ORF4435P |
4445 | 5-(carboxyamino)imidazole ribonucleotide | |||
5865 | replication initiation factor domain-containing | |||
5870 | V | V.Ngos1291ORF65P (100% identity) | V.NgoSW0005ORF5880P | |
5875 | R | NgoWSORF1801P (98% identity) | NgoSW0005ORF5880P | |
??? | M | M.Ngos1291ORF65P (100% identity) | M.NgoSW0005ORF5880P | |
5890 | type IV pilin protein | |||
6065 | excinuclease ABC subunit UvrA | |||
6070 | R | Ngos1291ORF260P (100% identity) | CCGCGG | NgoSW0005ORF6075P |
6075 | M | M.Ngos1291ORF260P (100% identity) | CCGCGG | M.NgoSW0005ORF6075P |
6080 | transposase | |||
9105 | FUSC family protein | |||
9110 | R | NgoSW0223ORF9065P (100% identity) | GGCC | NgoSW0005ORF9115P |
9115 | M | M.Ngos1291ORF3515P (100% identity) | GGCC | M.NgoSW0005ORF9115P |
9120 | ribosome recycling factor | |||
9660 | 93 aa hypothetical protein | |||
9665 | R | Ngos1291IIP (100% identity) | GGTGA | NgoSW0005ORF9670P |
9670 | M | M1.NgoSW0259ORF9605P (100% identity) | GGTGA | M1.NgoSW0005ORF9670P |
9675 | M | M2.Ngos1291II (100% identity) | GGTGA | M2.NgoSW0005ORF9670P |
9680 | RNA-binding transcriptional accessory protein | |||
10205 | GTPase ObgE | |||
10210 | M | M.NgoSW0018ORF10195P (100% identity) | RGCGCY | M.NgoSW0005ORF10210P |
10215 | R | Ngos1291ORF4640P (100% identity) | RGCGCY | NgoSW0005ORF10210P |
10220 | cysteine--tRNA ligase | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
2790 | peptidyl-prolyl cis-trans isomerase | |||
2795 | M | M.NgoSW0032ORF2780P (100% identity) | CCACC | M.NgoSW0005ORF2795P |
2800 | R | NgoSW0018ORF2770P (99% identity) | CCACC | NgoSW0005ORF2795P |
2805 | tRNA 2-thiocytidine(32) synthetase TtcA | |||
3265 | alpha-hydroxy-acid oxidizing protein | |||
3270 | R | NgoSW0015ORF3255P (100% identity) | GCAGA | NgoSW0005ORF3275P |
3275 | M | M.NgoSW0015ORF3255P (99% identity) | GCAGA | M.NgoSW0005ORF3275P |
3280 | tRNA pseudouridine(55) synthase TruB |