Ref: Iyer,M.S. et al. unpublished

REBASE ref # 31417

Complete sequence: 2,152,607 bp

GenBank #: CP061490

REBASE acronym: NgoSW0005

Org_num: 45340

 

All begin IBX76_

Type I
ORF Gene Most similar Specificity Name
 
2070 ADP-glyceromanno-heptose 6-epimerase
2075 M M.NgoFA19ORF148P (99% identity) M.NgoSW0005ORF2075P
2080 DNA damage-inducible protein D
2085 S S1.NgoWSII (100% identity) GCANNNNNNNNTGC S1.NgoSW0005ORF2075P
2090 S S2.NgoSW0274ORF2075P (100% identity) GCANNNNNNNNTGC S2.NgoSW0005ORF2075P
2095 R NgoSW0032ORF2070P (99% identity) NgoSW0005ORF2075P
2100 ATP-dependent Clp protease ATP-binding subunit
 
3565 replication-associated recombination protein A
3570 R Ngos1291ORF9245P (100% identity) GAGNNNNNTAC NgoSW0005ORF3595P
3575 hydroxyacid dehydrogenase
3580 S S.NgoSW0032ORF3575P (100% identity) GAGNNNNNTAC S.NgoSW0005ORF3595P
3585 186 aa hypothetical protein
3590 280 aa hypothetical protein
3595 M M.Ngos1291ORF9245P (100% identity) GAGNNNNNTAC M.NgoSW0005ORF3595P
3600 ABC transporter
Type II
ORF Gene Most similar Specificity Name
 
30 leucine--tRNA ligase
35 R NgoSW0274ORF40P (85% identity) NgoSW0005ORF40P
40 restriction endonuclease
 
40 restriction endonuclease
??? M M.Ngo34769ORF45P (77% identity) M.NgoSW0005ORF45P
55 184 aa hypothetical protein
 
1550 phenylalanine--tRNA ligase subunit alpha
1555 V V.NgoWSORF391P (100% identity) V.NgoSW0005ORF1560P
??? M M.NgoWSORF391P (100% identity) M.NgoSW0005ORF1560P
1565 R NgoSW0274ORF1550P (100% identity) NgoSW0005ORF1560P
1570 phenylalanine--tRNA ligase subunit beta
 
1835 IS1595 family transposase
1840 RM Ngos1291ORF7515P (100% identity) GACNNNNNTGA NgoSW0005ORF1840P
1845 S S.Ngos1291ORF7515P (100% identity) GACNNNNNTGA S.NgoSW0005ORF1840P
1850 140 aa hypothetical protein
 
1870 uroporphyrinogen decarboxylase
1875 H H.Ngos1291ORF7560P (100% identity) H.NgoSW0005ORF1885P
1880 R Ngos1291ORF7560P (100% identity) GCSGC NgoSW0005ORF1885P
1885 M M.NgoSW0018ORF1895P (100% identity) GCSGC M.NgoSW0005ORF1885P
1890 DNA repair protein RadA
 
3450 3-isopropylmalate dehydrogenase
3455 R NgoSW0274ORF3455P (100% identity) GGNNCC NgoSW0005ORF3460P
3460 M M.NmeM395ORFKP (100% identity) GGNNCC M.NgoSW0005ORF3460P
3465 3-isopropylmalate dehydratase small subunit
 
4430 anthranilate synthase component I
4435 M M.NgoSW0236ORF4405P (100% identity) GCCGGC M.NgoSW0005ORF4435P
4440 R Ngos1291ORF10080P (100% identity) GCCGGC NgoSW0005ORF4435P
4445 5-(carboxyamino)imidazole ribonucleotide
 
5865 replication initiation factor domain-containing
5870 V V.Ngos1291ORF65P (100% identity) V.NgoSW0005ORF5880P
5875 R NgoWSORF1801P (98% identity) NgoSW0005ORF5880P
??? M M.Ngos1291ORF65P (100% identity) M.NgoSW0005ORF5880P
5890 type IV pilin protein
 
6065 excinuclease ABC subunit UvrA
6070 R Ngos1291ORF260P (100% identity) CCGCGG NgoSW0005ORF6075P
6075 M M.Ngos1291ORF260P (100% identity) CCGCGG M.NgoSW0005ORF6075P
6080 transposase
 
9105 FUSC family protein
9110 R NgoSW0223ORF9065P (100% identity) GGCC NgoSW0005ORF9115P
9115 M M.Ngos1291ORF3515P (100% identity) GGCC M.NgoSW0005ORF9115P
9120 ribosome recycling factor
 
9660 93 aa hypothetical protein
9665 R Ngos1291ORF4080P (100% identity) GGTGA NgoSW0005ORF9670P
9670 M M1.NgoSW0259ORF9605P (100% identity) GGTGA M1.NgoSW0005ORF9670P
9675 M M2.Ngos1291ORF4080P (100% identity) GGTGA M2.NgoSW0005ORF9670P
9680 RNA-binding transcriptional accessory protein
 
10205 GTPase ObgE
10210 M M.NgoSW0018ORF10195P (100% identity) RGCGCY M.NgoSW0005ORF10210P
10215 R Ngos1291ORF4640P (100% identity) RGCGCY NgoSW0005ORF10210P
10220 cysteine--tRNA ligase
Type III
ORF Gene Most similar Specificity Name
 
2790 peptidyl-prolyl cis-trans isomerase
2795 M M.NgoSW0032ORF2780P (100% identity) CCACC M.NgoSW0005ORF2795P
2800 R NgoSW0018ORF2770P (99% identity) CCACC NgoSW0005ORF2795P
2805 tRNA 2-thiocytidine(32) synthetase TtcA
 
3265 alpha-hydroxy-acid oxidizing protein
3270 R NgoSW0015ORF3255P (100% identity) GCAGA NgoSW0005ORF3275P
3275 M M.NgoSW0015ORF3255P (99% identity) GCAGA M.NgoSW0005ORF3275P
3280 tRNA pseudouridine(55) synthase TruB