Neisseria gonorrhoeae SW0002 |
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Putative Neisseria gonorrhoeae SW0002 RM systems
Ref: Iyer,M.S. et al. unpublished
REBASE ref # 31417
Complete sequence: 2,153,658 bp
GenBank #: CP061491
REBASE acronym: NgoSW0002
Org_num: 45339
All begin IBX75_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2085 | ADP-glyceromanno-heptose 6-epimerase | |||
| 2090 | M | M.Ngo9035ORF2405P (100% identity) | M.NgoSW0002ORF2090P | |
| 2095 | DNA damage-inducible protein D | |||
| 2100 | S | S1.NgoWSII (100% identity) | GCANNNNNNNNTGC | S1.NgoSW0002ORF2090P |
| 2105 | S | S2.NgoSW0274ORF2075P (100% identity) | GCANNNNNNNNTGC | S2.NgoSW0002ORF2090P |
| 2110 | R | NgoSW0274ORF2075P (99% identity) | NgoSW0002ORF2090P | |
| 2115 | ATP-dependent Clp protease ATP-binding subunit | |||
| 3575 | replication-associated recombination protein A | |||
| 3580 | R | NgoSW0274ORF3585P (99% identity) | GAGNNNNNTAC | NgoSW0002ORF3605P |
| 3585 | hydroxyacid dehydrogenase | |||
| 3590 | S | S.NgoSW0274ORF3585P (100% identity) | GAGNNNNNTAC | S.NgoSW0002ORF3605P |
| 3595 | 186 aa hypothetical protein | |||
| 3600 | 280 aa hypothetical protein | |||
| 3605 | M | M.Ngo10296ORF3895P (99% identity) | GAGNNNNNTAC | M.NgoSW0002ORF3605P |
| 3610 | ABC transporter | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 30 | leucine--tRNA ligase | |||
| 35 | R | NgoSW0274ORF40P (85% identity) | NgoSW0002ORF40P | |
| 40 | restriction endonuclease | |||
| 40 | restriction endonuclease | |||
| ??? | M | M.NgoSW0018ORF45P (100% identity) | M.NgoSW0002ORF45P | |
| 55 | 184 aa hypothetical protein | |||
| 1555 | phenylalanine--tRNA ligase subunit alpha | |||
| 1560 | V | V.NgoWSORF391P (100% identity) | V.NgoSW0002ORF1565P | |
| ??? | M | M.NgoWSORF391P (100% identity) | M.NgoSW0002ORF1565P | |
| 1575 | R | NgoWSORF391P (100% identity) | NgoSW0002ORF1565P | |
| 1580 | phenylalanine--tRNA ligase subunit beta | |||
| 1850 | IS1595 family transposase | |||
| 1855 | RM | NgoSW0259ORF1830P (99% identity) | GACNNNNNTGA | NgoSW0002ORF1855P |
| 1860 | S | S.Ngos1291ORF7515P (100% identity) | GACNNNNNTGA | S.NgoSW0002ORF1855P |
| 1865 | 140 aa hypothetical protein | |||
| 1885 | uroporphyrinogen decarboxylase | |||
| 1890 | H | H.NgoSW0018ORF1895P (100% identity) | H.NgoSW0002ORF1900P | |
| 1895 | R | Ngos1291ORF7560P (100% identity) | GCSGC | NgoSW0002ORF1900P |
| 1900 | M | M.Ngos1291ORF7560P (100% identity) | GCSGC | M.NgoSW0002ORF1900P |
| 1905 | DNA repair protein RadA | |||
| 3465 | 3-isopropylmalate dehydrogenase | |||
| 3470 | R | NgoWSORF784P (100% identity) | GGNNCC | NgoSW0002ORF3475P |
| 3475 | M | M.NmeMBW2ORFJP (100% identity) | GGNNCC | M.NgoSW0002ORF3475P |
| 3480 | 3-isopropylmalate dehydratase small subunit | |||
| 4440 | anthranilate synthase component I | |||
| 4445 | M | M.NgoSW0236ORF4405P (100% identity) | GCCGGC | M.NgoSW0002ORF4445P |
| 4450 | R | Ngos1291ORF10080P (100% identity) | GCCGGC | NgoSW0002ORF4445P |
| 4455 | 5-(carboxyamino)imidazole ribonucleotide | |||
| 5870 | replication initiation factor domain-containing | |||
| 5875 | V | V.Ngos1291ORF65P (100% identity) | V.NgoSW0002ORF5885P | |
| 5880 | R | Ngos1291ORF65P (100% identity) | NgoSW0002ORF5885P | |
| ??? | M | M.Ngos1291ORF65P (100% identity) | M.NgoSW0002ORF5885P | |
| 5895 | type IV pilin protein | |||
| 6075 | excinuclease ABC subunit UvrA | |||
| 6080 | R | Ngos1291ORF260P (100% identity) | CCGCGG | NgoSW0002ORF6085P |
| 6085 | M | M.Ngos1291ORF260P (100% identity) | CCGCGG | M.NgoSW0002ORF6085P |
| 6090 | transposase | |||
| 9130 | FUSC family protein | |||
| 9135 | R | NgoWSORF2276P (100% identity) | GGCC | NgoSW0002ORF9140P |
| 9140 | M | M.NgoSW0274ORF9100P (100% identity) | GGCC | M.NgoSW0002ORF9140P |
| 9145 | ribosome recycling factor | |||
| 9685 | 93 aa hypothetical protein | |||
| 9690 | R | NgoWSIIIP (100% identity) | GGTGA | NgoSW0002ORF9695P |
| 9695 | M | M1.NgoSW0259ORF9605P (100% identity) | GGTGA | M1.NgoSW0002ORF9695P |
| 9700 | M | M1.NgoWSIII (100% identity) | GGTGA | M2.NgoSW0002ORF9695P |
| 9705 | RNA-binding transcriptional accessory protein | |||
| 10225 | GTPase ObgE | |||
| 10230 | M | M.NgoSW0018ORF10195P (100% identity) | RGCGCY | M.NgoSW0002ORF10230P |
| 10235 | R | Ngos1291ORF4640P (100% identity) | RGCGCY | NgoSW0002ORF10230P |
| 10240 | cysteine--tRNA ligase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2810 | peptidyl-prolyl cis-trans isomerase | |||
| 2815 | M | M.NgoSW0032ORF2780P (100% identity) | CCACC | M.NgoSW0002ORF2815P |
| 2820 | R | Ngos1291ORF8455P (100% identity) | CCACC | NgoSW0002ORF2815P |
| 2825 | tRNA 2-thiocytidine(32) synthetase TtcA | |||
| 3280 | alpha-hydroxy-acid oxidizing protein | |||
| 3285 | R | NgoWLORF910P (99% identity) | GCAGA | NgoSW0002ORF3290P |
| 3290 | M | M.NgoSW0223ORF3260P (98% identity) | GCAGA | M.NgoSW0002ORF3290P |
| 3295 | tRNA pseudouridine(55) synthase TruB | |||