Ref: Iyer,M.S. et al. unpublished

REBASE ref # 31417

Complete sequence: 2,153,658 bp

GenBank #: CP061491

REBASE acronym: NgoSW0002

Org_num: 45339

 

All begin IBX75_

Type I
ORF Gene Most similar Specificity Name
 
2085 ADP-glyceromanno-heptose 6-epimerase
2090 M M.Ngo9035ORF2405P (100% identity) M.NgoSW0002ORF2090P
2095 DNA damage-inducible protein D
2100 S S1.NgoWSII (100% identity) GCANNNNNNNNTGC S1.NgoSW0002ORF2090P
2105 S S2.NgoSW0274ORF2075P (100% identity) GCANNNNNNNNTGC S2.NgoSW0002ORF2090P
2110 R NgoSW0274ORF2075P (99% identity) NgoSW0002ORF2090P
2115 ATP-dependent Clp protease ATP-binding subunit
 
3575 replication-associated recombination protein A
3580 R NgoSW0274ORF3585P (99% identity) GAGNNNNNTAC NgoSW0002ORF3605P
3585 hydroxyacid dehydrogenase
3590 S S.NgoSW0274ORF3585P (100% identity) GAGNNNNNTAC S.NgoSW0002ORF3605P
3595 186 aa hypothetical protein
3600 280 aa hypothetical protein
3605 M M.Ngo10296ORF3895P (99% identity) GAGNNNNNTAC M.NgoSW0002ORF3605P
3610 ABC transporter
Type II
ORF Gene Most similar Specificity Name
 
30 leucine--tRNA ligase
35 R NgoSW0274ORF40P (85% identity) NgoSW0002ORF40P
40 restriction endonuclease
 
40 restriction endonuclease
??? M M.NgoSW0018ORF45P (100% identity) M.NgoSW0002ORF45P
55 184 aa hypothetical protein
 
1555 phenylalanine--tRNA ligase subunit alpha
1560 V V.NgoWSORF391P (100% identity) V.NgoSW0002ORF1565P
??? M M.NgoWSORF391P (100% identity) M.NgoSW0002ORF1565P
1575 R NgoWSORF391P (100% identity) NgoSW0002ORF1565P
1580 phenylalanine--tRNA ligase subunit beta
 
1850 IS1595 family transposase
1855 RM NgoSW0259ORF1830P (99% identity) GACNNNNNTGA NgoSW0002ORF1855P
1860 S S.Ngos1291ORF7515P (100% identity) GACNNNNNTGA S.NgoSW0002ORF1855P
1865 140 aa hypothetical protein
 
1885 uroporphyrinogen decarboxylase
1890 H H.NgoSW0018ORF1895P (100% identity) H.NgoSW0002ORF1900P
1895 R Ngos1291ORF7560P (100% identity) GCSGC NgoSW0002ORF1900P
1900 M M.Ngos1291ORF7560P (100% identity) GCSGC M.NgoSW0002ORF1900P
1905 DNA repair protein RadA
 
3465 3-isopropylmalate dehydrogenase
3470 R NgoWSORF784P (100% identity) GGNNCC NgoSW0002ORF3475P
3475 M M.NmeM395ORFKP (100% identity) GGNNCC M.NgoSW0002ORF3475P
3480 3-isopropylmalate dehydratase small subunit
 
4440 anthranilate synthase component I
4445 M M.NgoSW0236ORF4405P (100% identity) GCCGGC M.NgoSW0002ORF4445P
4450 R Ngos1291ORF10080P (100% identity) GCCGGC NgoSW0002ORF4445P
4455 5-(carboxyamino)imidazole ribonucleotide
 
5870 replication initiation factor domain-containing
5875 V V.Ngos1291ORF65P (100% identity) V.NgoSW0002ORF5885P
5880 R Ngos1291ORF65P (100% identity) NgoSW0002ORF5885P
??? M M.Ngos1291ORF65P (100% identity) M.NgoSW0002ORF5885P
5895 type IV pilin protein
 
6075 excinuclease ABC subunit UvrA
6080 R Ngos1291ORF260P (100% identity) CCGCGG NgoSW0002ORF6085P
6085 M M.Ngos1291ORF260P (100% identity) CCGCGG M.NgoSW0002ORF6085P
6090 transposase
 
9130 FUSC family protein
9135 R NgoWSORF2276P (100% identity) GGCC NgoSW0002ORF9140P
9140 M M.NgoSW0274ORF9100P (100% identity) GGCC M.NgoSW0002ORF9140P
9145 ribosome recycling factor
 
9685 93 aa hypothetical protein
9690 R NgoWSIIIP (100% identity) GGTGA NgoSW0002ORF9695P
9695 M M1.NgoSW0259ORF9605P (100% identity) GGTGA M1.NgoSW0002ORF9695P
9700 M M1.NgoWSIII (100% identity) GGTGA M2.NgoSW0002ORF9695P
9705 RNA-binding transcriptional accessory protein
 
10225 GTPase ObgE
10230 M M.NgoSW0018ORF10195P (100% identity) RGCGCY M.NgoSW0002ORF10230P
10235 R Ngos1291ORF4640P (100% identity) RGCGCY NgoSW0002ORF10230P
10240 cysteine--tRNA ligase
Type III
ORF Gene Most similar Specificity Name
 
2810 peptidyl-prolyl cis-trans isomerase
2815 M M.NgoSW0032ORF2780P (100% identity) CCACC M.NgoSW0002ORF2815P
2820 R Ngos1291ORF8455P (100% identity) CCACC NgoSW0002ORF2815P
2825 tRNA 2-thiocytidine(32) synthetase TtcA
 
3280 alpha-hydroxy-acid oxidizing protein
3285 R NgoWLORF910P (99% identity) GCAGA NgoSW0002ORF3290P
3290 M M.NgoSW0223ORF3260P (98% identity) GCAGA M.NgoSW0002ORF3290P
3295 tRNA pseudouridine(55) synthase TruB