Photobacterium damselae subsp. piscicida AS-16-0555-7 |
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Putative Photobacterium damselae subsp. piscicida AS-16-0555-7 RM systems
Ref: Baseggio,L. et al. unpublished
REBASE ref # 31337
| Sequence length: | GenBank #: | |
| chromosome 1: | 3,230,122 bp | CP061861 |
| chromosome 2: | 1,134,735 bp | CP061862 |
| plasmid unnamed3: | 23,189 bp | CP061866 |
REBASE acronym: Pda5557
Org_num: 44938
All begin IC628_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 7640 | 130 aa hypothetical protein | |||
| 7645 | M | M.Pda91197ORF1650P (96% identity) | M.Pda5557ORF7645P | |
| 7650 | S | S.Pda91197ORF1650P (100% identity) | S.Pda5557ORF7645P | |
| 7655 | serine/threonine-protein kinase | |||
| chromosome 2 | ||||
| 17395 | ribosome biogenesis GTPase YlqF | |||
| 17400 | R | R2.Pda91197ORF1067P (100% identity) | Pda5557ORF17415AP | |
| 17405 | IS1-like element ISPda1 family transposase | |||
| 17410 | R | Pda5401ORF20185BP (100% identity) | Pda5557ORF17415BP | |
| 17415 | M | M.Pda91197ORF1067P (100% identity) | M.Pda5557ORF17415P | |
| 17420 | restriction endonuclease subunit S | |||
| 19040 | 88 aa hypothetical protein | |||
| 19045 | R | R1.Pda91197ORF724P (99% identity) | Pda5557ORF19060P | |
| 19050 | group II intron reverse transcriptase/maturase | |||
| 19055 | S | S.Pda91197ORF724P (100% identity) | S.Pda5557ORF19060P | |
| 19060 | M | M.Pda91197ORF724P (100% identity) | M.Pda5557ORF19060P | |
| 19065 | IS1-like element ISPda1 family transposase | |||
| 21320 | 64 aa hypothetical protein | |||
| 21325 | R | Pda91197ORF114P (98% identity) | Pda5557ORF21340P | |
| 21330 | SIR2 family protein | |||
| 21335 | S | S.Pda91197ORF114P (100% identity) | S.Pda5557ORF21340P | |
| 21340 | M | M.Pda5401ORF18090P (100% identity) | M.Pda5557ORF21340P | |
| 21345 | 130 aa hypothetical protein | |||
| 21395 | restriction endonuclease subunit S | |||
| 21400 | M | M.Pda91197ORF103P (100% identity) | M.Pda5557ORF21400P | |
| 21405 | S | S.Pda5401ORF18150P (100% identity) | S.Pda5557ORF21400P | |
| 21410 | R | Pda91197ORF103P (100% identity) | Pda5557ORF21400P | |
| 21415 | M48 family metallopeptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 1105 | AAA family ATPase | |||
| 1110 | M | M.Pda91197ORF3020P (100% identity) | GATC | M.Pda5557DamP |
| 1115 | DUF2970 domain-containing protein | |||
| 9445 | 62 aa hypothetical protein | |||
| 9450 | M | M.Pda5401ORF9475P (100% identity) | M.Pda5557ORF9450P | |
| 9455 | RM | Pda5401ORF9475P (100% identity) | Pda5557ORF9450P | |
| 9460 | 257 aa hypothetical protein | |||
| chromosome 2 | ||||
| 18320 | HD domain-containing protein | |||
| 18325 | M | M.Pda91197ORF813P (100% identity) | M.Pda5557ORF18325P | |
| 18330 | alpha/beta fold hydrolase | |||
| 19410 | IS3 family transposase | |||
| 19415 | M | M.Pda5401ORF16140P (100% identity) | M.Pda5557ORF19415P | |
| ??? | R | Pda91197ORF625BP (100% identity) | Pda5557ORF19415BP | |
| 19420 | 64 aa hypothetical protein | |||
| 19425 | IS91-like element ISPda2 family transposase | |||
| 19430 | 64 aa hypothetical protein | |||
| 19435 | IS91-like element ISPda2 family transposase | |||
| 19440 | R | Pda5401ORF16140AP (100% identity) | Pda5557ORF19415AP | |
| 19445 | 94 aa hypothetical protein | |||
| plasmid unnamed3 | ||||
| 22955 | IS1-like element ISPda1 family transposase | |||
| 22960 | M | M.Pda5401ORF23070P (100% identity) | M.Pda5557ORF22960P | |
| 22965 | 62 aa hypothetical protein | |||