Thiohalocapsa sp. PB-PSB1 |
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Putative Thiohalocapsa sp. PB-PSB1 RM systems
Ref: Wilbanks,E.G. unpublished
REBASE ref # 17943
Complete sequence: 7,950,631 bp
GenBank #: CP050890
REBASE acronym: TspPSB1
Org_num: 13437
All begin N838_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 6645 | 124 aa hypothetical protein | |||
| 6650 | R | Mme286ORFQ1P (90% identity) | GAGNNNNNNAATC | TspPSB1XP |
| 6655 | S | S.Mme286ORFQ1P (100% identity) | GAGNNNNNNAATC | S.TspPSB1X |
| 6660 | 95 aa hypothetical protein | |||
| 6665 | 76 aa hypothetical protein | |||
| 6670 | type II toxin-antitoxin system VapC family | |||
| 6675 | M | M.Mme286ORFQ1P (100% identity) | GAGNNNNNNAATC | M.TspPSB1X |
| 6680 | 99 aa hypothetical protein | |||
| 19390 | M48 family metallopeptidase | |||
| 19395 | R | Mme286ORFMP (100% identity) | CCANNNNNNGTCA | TspPSB1VIIIP |
| 19400 | type II toxin-antitoxin system VapC family | |||
| 19405 | 79 aa hypothetical protein | |||
| 19410 | 76 aa hypothetical protein | |||
| 19415 | cell filamentation protein Fic | |||
| 19420 | S | S2.Mme286ORFMP (92% identity) | CCANNNNNNGTCA | S.TspPSB1VIII |
| 19425 | DUF1016 family protein | |||
| 19430 | M | M.Mme286ORFMP (100% identity) | CCANNNNNNGTCA | M.TspPSB1VIII |
| 19435 | 61 aa hypothetical protein | |||
| 21035 | four helix bundle protein | |||
| 21040 | S | S2.Mme286ORFJP (95% identity) | CAGNNNNNNNRTANYC | S2.TspPSB1VI |
| 21045 | S | S1.Mme286ORFJP (100% identity) | S1.TspPSB1VIP | |
| 21050 | M | M.Mme286ORFJP (100% identity) | CAGNNNNNNNRTANYC | M.TspPSB1VI |
| 21055 | R | Mme286ORFJP (100% identity) | CAGNNNNNNNRTANYC | TspPSB1VIP |
| 21060 | helix-turn-helix transcriptional regulator | |||
| 31760 | type II toxin-antitoxin system HicA family | |||
| 31765 | R | Mme286ORFO1P (74% identity) | GTGANNNNNNTGC | TspPSB1VIIP |
| 31770 | Fic family protein | |||
| 31775 | S | S.Mme286ORFO1P (100% identity) | GTGANNNNNNTGC | S.TspPSB1VII |
| 31780 | M | M.Mme286ORFO1P (96% identity) | GTGANNNNNNTGC | M.TspPSB1VII |
| 31785 | 65 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1930 | 276 aa hypothetical protein | |||
| 1935 | R | Mme286ORFA2P (72% identity) | GGATCC | TspPSB1IIIP |
| 1940 | helix-turn-helix transcriptional regulator | |||
| 1945 | M | M.Mme286ORFA2P (100% identity) | GGATCC | M.TspPSB1III |
| 1950 | IPTL-CTERM sorting domain-containing protein | |||
| 3090 | transposase | |||
| 3095 | R | Mme286ORFU1P (100% identity) | CTCGAG | TspPSB1VP |
| 3100 | M | M.Mme286ORFU1P (100% identity) | CTCGAG | M.TspPSB1V |
| 3105 | 127 aa hypothetical protein | |||
| 4425 | type II toxin-antitoxin system VapC family | |||
| 4430 | M | M.Mme286ORFAP (87% identity) | M.TspPSB1ORF4430P | |
| 4435 | Uma2 family endonuclease | |||
| 5510 | transposase | |||
| 5515 | M | M.TspPSB1ORF28760P (96% identity) | M.TspPSB1ORF5515P | |
| 5520 | transposase | |||
| 6035 | IS66 family transposase | |||
| 6040 | M | M.Mme286ORFDP (97% identity) | M.TspPSB1ORF6040P | |
| 6045 | 54 aa hypothetical protein | |||
| 7475 | DUF3800 domain-containing protein | |||
| 7480 | RM | Mme286ORFH1P (100% identity) | TspPSB1ORF7480P | |
| 7485 | helicase | |||
| 7535 | 225 aa hypothetical protein | |||
| 7540 | RM | Mme286ORFI1P (100% identity) | TspPSB1ORF7540P | |
| 7545 | 81 aa hypothetical protein | |||
| 8620 | 212 aa hypothetical protein | |||
| 8625 | M | M.Mme286ORFJ2P (100% identity) | M.TspPSB1ORF8625P | |
| 8630 | 119 aa hypothetical protein | |||
| 9205 | DUF4276 family protein | |||
| 9210 | M | M.Mme286ORFTAP (100% identity) | M.TspPSB1ORF9210P | |
| 9215 | IS4 family transposase | |||
| 9215 | IS4 family transposase | |||
| 9220 | M | M.Mme286ORFTBP (95% identity) | M.TspPSB1ORF9220P | |
| 9225 | ATP-binding protein | |||
| 9960 | histidine phosphatase family protein | |||
| 9965 | M | M.Mme286ORFD2P (96% identity) | AAGCTT | M.TspPSB1I |
| 9970 | YihY family inner membrane protein | |||
| 13750 | type II toxin-antitoxin system HicA family | |||
| 13755 | M | M.Mme286ORFX1P (84% identity) | CTGCAG | M.TspPSB1II |
| 13760 | R | Mme286ORFX1P (100% identity) | CTGCAG | TspPSB1IIP |
| 13765 | 116 aa hypothetical protein | |||
| 22360 | 246 aa hypothetical protein | |||
| 22365 | M | M.Mme286ORFT1P (100% identity) | AGGCCT | M.TspPSB1IV |
| 22370 | 178 aa hypothetical protein | |||
| 24420 | 89 aa hypothetical protein | |||
| 24425 | M | M.Mme286ORFH2P (100% identity) | M.TspPSB1ORF24425P | |
| 24430 | IS66 family transposase | |||
| 27760 | IS91 family transposase | |||
| 27765 | M | M.Mme286ORFFP (100% identity) | CCTNAGG | M.TspPSB1IX |
| 27770 | R | Mme286ORFFP (100% identity) | CCTNAGG | TspPSB1IXP |
| 27775 | transposase | |||
| 28755 | 588 aa hypothetical protein | |||
| 28760 | M | M.TspPSB1ORF5515P (96% identity) | M.TspPSB1ORF28760P | |
| 28765 | transposase | |||
| 32290 | IS66 family transposase | |||
| 32295 | M | M.TspPSB1ORF6040P (83% identity) | M.TspPSB1ORF32295P | |
| 32300 | glycosyltransferase family 2 protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 22725 | 75 aa hypothetical protein | |||
| 22730 | R | Mme286ORFP1P (91% identity) | TspPSB1ORF22745P | |
| 22735 | Txe/YoeB family addiction module toxin | |||
| 22740 | type II toxin-antitoxin system Phd/YefM family | |||
| 22745 | M | M.Mme286ORFP1P (100% identity) | M.TspPSB1ORF22745P | |
| 22750 | 197 aa hypothetical protein | |||
| 30875 | 118 aa hypothetical protein | |||
| 30880 | M | M.Mme286ORFF1P (100% identity) | M.TspPSB1ORF30880P | |
| 30885 | AAA family ATPase | |||
| 30915 | 139 aa hypothetical protein | |||
| 30920 | R | Mme286ORFG1P (100% identity) | TspPSB1ORF30940P | |
| 30925 | transcriptional regulator | |||
| 30930 | 82 aa hypothetical protein | |||
| 30935 | AAA family ATPase | |||
| 30940 | M | M.Mme286ORFG1P (100% identity) | M.TspPSB1ORF30940P | |
| 30945 | AIPR family protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 180 | DUF433 domain-containing protein | |||
| 185 | R | Mme286MrrP (100% identity) | TspPSB1MrrP | |
| 190 | 98 aa hypothetical protein | |||
| 6335 | 156 aa hypothetical protein | |||
| ??? | R | Mme286ORFSP (84% identity) | TspPSB1ORF6340P | |
| 6350 | 133 aa hypothetical protein | |||