Salmonella enterica subsp. enterica serovar London HA3-IN1 |
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Putative Salmonella enterica subsp. enterica serovar London HA3-IN1 RM systems
Ref: Wang,J. et al. unpublished
REBASE ref # 31313
| Sequence length: | GenBank #: | |
| Chromosome: | 4,746,179 bp | CP060132 |
| plasmid pYUHAP1: | 176,767 bp | CP060133 |
REBASE acronym: SenIN1
Org_num: 44778
All begin H2O76_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3888 | restriction endonuclease | |||
| 3889 | R | SenSP5ORF3890P (100% identity) | TAANNNNNNNGTTC | SenIN1ORF3890P |
| 3890 | M | M.SenSP5ORF3890P (100% identity) | TAANNNNNNNGTTC | M.SenIN1ORF3890P |
| 3891 | S | S.SenSP5ORF3890P (100% identity) | TAANNNNNNNGTTC | S.SenIN1ORF3890P |
| 3892 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 358 | cell division protein DamX | |||
| 359 | M | M.StyTDamP (100% identity) | GATC | M.SenIN1DamP |
| 360 | ribulose-phosphate 3-epimerase | |||
| 456 | DUF2556 family protein | |||
| 457 | M | M.SenTC177ORF2255P (100% identity) | ATGCAT | M.SenIN1ORF457P |
| 458 | DNA-binding transcriptional regulator Fis | |||
| 642 | DUF3850 domain-containing protein | |||
| 643 | M | M.SspZ54ORF6040P (100% identity) | M.SenIN1ORF643P | |
| 644 | replication endonuclease | |||
| 1776 | phosphohydrolase | |||
| 1777 | M | M.SenSP5DcmP (100% identity) | CCWGG | M.SenIN1DcmP |
| 1778 | V | V.StyTDcmP (100% identity) | V.SenIN1DcmP | |
| 1779 | drug/metabolite exporter YedA | |||
| 2921 | replication endonuclease | |||
| 2922 | M | M.SenSP5ORF2922P (100% identity) | GATC | M.SenIN1ORF2922P |
| 2923 | TraR/DksA family transcriptional regulator | |||
| 3915 | YebC/PmpR family DNA-binding transcriptional | |||
| 3916 | R | SenZYXORFBP (100% identity) | SenIN1ORF3916P | |
| 3917 | toprim domain-containing protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3432 | 33 aa hypothetical protein | |||
| 3433 | R | Ssp6947IIP (100% identity) | CAGAG | SenIN1ORF3434P |
| 3434 | M | M.SensIBG7b4ORF17175P (100% identity) | CAGAG | M.SenIN1ORF3434P |
| 3435 | MFS transporter | |||
| plasmid pYUHAP1 | ||||
| 460 | 245 aa hypothetical protein | |||
| 465 | M | M.SenSP5ORF35P (100% identity) | M.SenIN1ORF465P | |
| 470 | R | SenSP5ORF35P (100% identity) | SenIN1ORF465P | |
| 475 | multidrug transporter PecM | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3887 | BrnT family toxin | |||
| 3888 | R | StyTMrrP (100% identity) | SenIN1MrrP | |
| 3889 | type I restriction-modification system | |||