Escherichia coli EC96 |
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Putative Escherichia coli EC96 RM systems
Ref: Yin,M. et al. Antimicrob. Agents Chemother. (2020) In press
REBASE ref # 31211
| Sequence length: | GenBank #: | |
| Chromosome: | 4,461,910 bp | CP060748 |
| plasmid pEC96-130kb: | 129,702 bp | CP060750 |
| plasmid pEC96-153kb: | 153,051 bp | CP060749 |
| plasmid pEC96-32kb: | 32,368 bp | CP060752 |
| plasmid pEC96-CTX-M-215: | 68,439 bp | CP060753 |
REBASE acronym: EcoEC96
Org_num: 44485
All begin IAI02_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pEC96-130kb | ||||
| 22595 | type II toxin-antitoxin system Phd/YefM family | |||
| 22600 | M | M.Ecows53ORF23140P (100% identity) | M.EcoEC96ORF22600P | |
| 22605 | S | S.EcoC2117ORF22630P (89% identity) | S.EcoEC96ORF22600P | |
| 22610 | R | Ecows53ORF23140P (100% identity) | EcoEC96ORF22600P | |
| 22615 | 3-phosphatase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2120 | cell division protein DamX | |||
| 2125 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoEC96DamP |
| 2130 | ribulose-phosphate 3-epimerase | |||
| 2745 | DUF2556 family protein | |||
| 2750 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.EcoEC96ORF2750P |
| 2755 | DNA-binding transcriptional regulator Fis | |||
| 8605 | 252 aa hypothetical protein | |||
| 8610 | R | EcoYSP81ORFBP (100% identity) | RCSRC | EcoEC96ORF8610P |
| 8615 | transcription factor | |||
| 9275 | HD domain-containing protein | |||
| 9280 | M | M.SflSTLE3DcmP (100% identity) | CCWGG | M.EcoEC96DcmP |
| 9285 | V | V.SflSTLE3DcmP (100% identity) | V.EcoEC96DcmP | |
| 9290 | drug/metabolite exporter YedA | |||
| 12995 | LexA family transcriptional regulator | |||
| 13000 | M | M.Sso90ORF15820P (100% identity) | GATC | M.EcoEC96ORF13000P |
| 13005 | PerC family transcriptional regulator | |||
| plasmid pEC96-130kb | ||||
| 22820 | 73 aa hypothetical protein | |||
| 22825 | M | M.StyR64ORFAP (100% identity) | M.EcoEC96ORF22825P | |
| 22830 | 103 aa hypothetical protein | |||
| plasmid pEC96-153kb | ||||
| 21945 | 102 aa hypothetical protein | |||
| 21950 | M | M.SflN101ORF24625P (100% identity) | M.EcoEC96ORF21950P | |
| 21955 | 73 aa hypothetical protein | |||
| plasmid pEC96-32kb | ||||
| 23765 | ATP-dependent helicase | |||
| 23770 | RM | KpnWS292ORF30440P (98% identity) | EcoEC96ORF23770P | |
| 23775 | 62 aa hypothetical protein | |||
| plasmid pEC96-CTX-M-215 | ||||
| 23860 | 100 aa hypothetical protein | |||
| 23865 | M | M.SensS499ORF26615P (100% identity) | M.EcoEC96ORF23865P | |
| 23870 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pEC96-153kb | ||||
| 21630 | mobilization protein MobX | |||
| 21635 | R | SspS13ORF650P (100% identity) | EcoEC96ORF21640P | |
| 21640 | M | M.SspS13ORF650P (100% identity) | M.EcoEC96ORF21640P | |
| 21645 | 67 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 12865 | IS3 family transposase | |||
| 12870 | R | EcosEC27McrCP (100% identity) | EcoEC96McrCP | |
| 12875 | R | EcoUKMcrBP (100% identity) | EcoEC96McrBP | |
| 12880 | recombinase family protein | |||