Lachnospiraceae bacterium NSJ-4 |
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Putative Lachnospiraceae bacterium NSJ-4 RM systems
Ref: Liu,C. and Sun,Q. unpublished
REBASE ref # 31162
Complete sequence: 2,942,917 bp
GenBank #: CP060632
REBASE acronym: LbaNSJ4
Org_num: 44467
All begin H9Q76_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2660 | Fic family protein | |||
| 2665 | M | M.RobA2ORF29030P (91% identity) | M.LbaNSJ4ORF2665P | |
| 2670 | S | S1.PmeBin329ORFDP (51% identity) | S1.LbaNSJ4ORF2665P | |
| 2675 | tyrosine-type recombinase/integrase | |||
| 2680 | S | S2.AhaSSC2ORF30830P (44% identity) | S2.LbaNSJ4ORF2665P | |
| 2685 | R | PmeBin253ORFAP (81% identity) | LbaNSJ4ORF2665P | |
| 2690 | DUF1294 domain-containing protein | |||
| 9550 | 216 aa hypothetical protein | |||
| 9555 | S | S3.PmeBin47ORFHP (44% identity) | S1.LbaNSJ4ORF9555P | |
| 9560 | tyrosine-type recombinase/integrase | |||
| 9565 | S | S3.Fba500ORF1744P (29% identity) | S2.LbaNSJ4ORF9555P | |
| 9570 | restriction endonuclease subunit S | |||
| 9565 | restriction endonuclease subunit S | |||
| 9570 | S | S1.EbaCHKC4ORF1762P (58% identity) | S.LbaNSJ4ORF9575P | |
| 9575 | M | M.PmeBin220ORFCP (99% identity) | M.LbaNSJ4ORF9575P | |
| 9580 | R | PmeBin220ORFCP (98% identity) | LbaNSJ4ORF9575P | |
| 9585 | 325 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2140 | helix-turn-helix domain-containing protein | |||
| 2145 | M | M1.Efa8175ORF13510P (50% identity) | M1.LbaNSJ4ORF2145P | |
| 2150 | M | M1.RspA76IP (22% identity) | M2.LbaNSJ4ORF2145P | |
| 2155 | RM | M1.RspA76IP (32% identity) | LbaNSJ4ORF2145P | |
| 2160 | DUF4935 domain-containing protein | |||
| 5865 | BREX system P-loop protein BrxC | |||
| 5870 | RM | HgmAORFKP (63% identity) | LbaNSJ4ORF5870P | |
| 5875 | nucleotide-binding protein | |||
| 9280 | 221 aa hypothetical protein | |||
| 9285 | R | GvuPSS1IIP (50% identity) | LbaNSJ4ORF9295P | |
| 9290 | MamI family restriction endonuclease | |||
| 9295 | M | M.Cau793ORF17010P (58% identity) | M.LbaNSJ4ORF9295P | |
| 9300 | 107 aa hypothetical protein | |||
| 12185 | DNA binding domain-containing protein | |||
| 12190 | V | V.Rin31NBORF12860P (93% identity) | V.LbaNSJ4ORF12205P | |
| 12195 | transcriptional regulator | |||
| 12200 | 251 aa hypothetical protein | |||
| 12205 | M | M.Lba2492ORFFP (99% identity) | M.LbaNSJ4ORF12205P | |
| 12210 | PD-(D/E)XK motif protein | |||
| 12210 | PD-(D/E)XK motif protein | |||
| 12215 | M | M.Rin31NBORF12870P (99% identity) | M.LbaNSJ4ORF12215P | |
| 12220 | 240 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 12135 | 8-oxo-dGTP diphosphatase MutT | |||
| 12140 | R | EreMORF3680P (53% identity) | LbaNSJ4ORF12140P | |
| 12145 | 96 aa hypothetical protein | |||
| 12270 | 55 aa hypothetical protein | |||
| 12275 | R | PmeBin183ORFCP (18% identity) | LbaNSJ4ORF12275P | |
| 12280 | 126 aa hypothetical protein | |||