Lactobacillus saerimneri 1A |
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Putative Lactobacillus saerimneri 1A RM systems
Ref: Hassan,H.M. unpublished
REBASE ref # 30966
Complete sequence: 1,802,611 bp
GenBank #: CP047418
REBASE acronym: Lsa1A
Org_num: 44305
All begin GTO87_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 5325 | RNase J family beta-CASP ribonuclease | |||
| 5330 | S | S.Lbr556I (29% identity) | S.Lsa1AORF5335P | |
| 5335 | M | M.LsaCEA3ORF9445P (88% identity) | M.Lsa1AORF5335P | |
| 5340 | R | LsaCEA3ORF9445P (63% identity) | Lsa1AORF5335P | |
| 5345 | YegS/Rv2252/BmrU family lipid kinase | |||
| 6175 | restriction endonuclease subunit S | |||
| 6180 | M | M.Lsa30AORF4499P (98% identity) | M.Lsa1AORF6180P | |
| 6185 | S | S1.LsaL28ORF2505P (61% identity) | S.Lsa1AORF6180P | |
| 6190 | R | Lsa30AORF4499P (98% identity) | Lsa1AORF6180P | |
| 6195 | restriction endonuclease subunit M | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1115 | GTP-binding protein | |||
| 1120 | RM | Lfe175ORF9985P (56% identity) | Lsa1AORF1120P | |
| 1125 | IS3 family transposase | |||
| 1135 | Mrr restriction system protein | |||
| 1140 | M | M.Lsp680ORF2170P (47% identity) | M.Lsa1AORF1140P | |
| 1145 | 571 aa hypothetical protein | |||
| 2810 | RusA family crossover junction | |||
| 2815 | M | M.Cje083ORF27P (99% identity) | M.Lsa1AORF2815P | |
| 2820 | 64 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2660 | IS3 family transposase | |||
| 2665 | M | M.Lsa30AORF7230P (75% identity) | M.Lsa1AORF2665P | |
| 2670 | R | Lsa30AORF7230P (98% identity) | Lsa1AORF2665P | |
| 2675 | 430 aa hypothetical protein | |||
| 4770 | 319 aa hypothetical protein | |||
| 4775 | R | LsaM11ORF4035P (84% identity) | Lsa1AORF4780P | |
| 4780 | M | M3.Lsa006ORF10485P (17% identity) | M.Lsa1AORF4780BP | |
| 4785 | IS3 family transposase | |||
| 4790 | IS3 family transposase | |||
| 4795 | helix-turn-helix domain-containing protein | |||
| 4800 | M | M.Lpl311ORF15635P (52% identity) | M.Lsa1AORF4780AP | |
| 4805 | type II toxin-antitoxin system RelE/ParE family | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1100 | exodeoxyribonuclease III | |||
| 1105 | R | Lsa30AORF7709P (99% identity) | Lsa1AORF1105P | |
| 1110 | 174 aa hypothetical protein | |||
| 1130 | helix-turn-helix domain-containing protein | |||
| 1135 | R | Lsa30AMrrP (93% identity) | Lsa1AMrrP | |
| 1140 | N-6 DNA methylase | |||